The Very Old AFNI Message Board
These are the messages that were posted at the old message board
(on varda.biophysics.mcw.edu).
You cannot follow up these messages
- you must start a new thread on the
new board if you want to post
a message.
Old Message Archive
- 3dDeconvolve for IRFs and collinearity - Luiz Pessoa 20:11:27 06 Apr 2001
(1)
- Interleaved slices & 3dDeconvolve - Shaunna Morris 17:12:54 06 Apr 2001
(1)
- 3dcalc - Martin Paulus 10:38:41 06 Apr 2001
(1)
- how to get the average time course in ROI - jian 15:47:02 05 Apr 2001
(1)
- Afni_plugin_path not working - James Patterson 06:24:58 03 Apr 2001
(1)
- Talairach Axis not same as AFNI's. - Larry Gates 14:20:10 02 Apr 2001
(1)
- compare the area under the curve - Jinghui Zhao 02:01:37 02 Apr 2001
(3)
- compare the area under the curve - Jinghui Zhao 01:57:56 02 Apr 2001
(0)
- compare the area under the curve - Jinghui Zhao 01:56:46 02 Apr 2001
(0)
- compare the area under the curve - Jinghui Zhao 01:55:28 02 Apr 2001
(0)
- compare the area under the curve - Jinghui Zhao 01:54:48 02 Apr 2001
(0)
- event related specification - Giuseppe Pagnoni 11:32:55 29 Mar 2001
(0)
- 1dgrayplot - Giuseppe Pagnoni 11:41:16 28 Mar 2001
(2)
- Matrix file - Phoebe 10:43:47 27 Mar 2001
(11)
- How could I know which column of ideal file was used by fico - Wei-Ting Zhang 08:57:12 27 Mar 2001
(1)
- 3dWilcoxon - jian 20:14:45 24 Mar 2001
(1)
- ANOVA2 problem - Jian 16:47:34 22 Mar 2001
(5)
- to3d of epibold data reconned with GE's epirecon program - K S Gopinath 15:18:56 22 Mar 2001
(1)
- significance levels - Gary 11:47:08 22 Mar 2001
(8)
- on which brain to overlay to group result - jian 16:32:55 21 Mar 2001
(1)
- GE Signa ximg extract - James Patterson 15:11:09 19 Mar 2001
(0)
- 3dDeconvolve and number of events - Luiz Pessoa 13:03:38 19 Mar 2001
(1)
- siemens_vision program reads header info?! - Jim Eliassen 14:43:10 16 Mar 2001
(1)
- 3dANOVA? - Christine Hooker 14:07:27 16 Mar 2001
(1)
- 3dDeconvolve for t-test - Phoebe 18:02:48 14 Mar 2001
(6)
- Using Deconvolution to Estimate Impulse Response Functions - Hillary Schaefer 17:16:38 13 Mar 2001
(1)
- Rendering question - Paul J. Reber 17:55:04 12 Mar 2001
(3)
- What effect has transformation to talairach grid on timeseries graphs - Florian Hauch 06:47:09 12 Mar 2001
(1)
- after 3dTcat - Denise Wu 18:10:12 09 Mar 2001
(1)
- t-test on time series data - Jian 09:43:29 09 Mar 2001
(7)
- EPI vs. anat registration with 3dvolreg - Jeff Orchard 17:33:19 08 Mar 2001
(1)
- Masking - Paul J. Reber 11:17:01 07 Mar 2001
(5)
- Superimposition of functional dataset on high resolution anatomical SPGR - Phoebe 20:25:30 27 Feb 2001
(3)
- Intensity normalization - Phoebe 12:21:04 27 Feb 2001
(2)
- -1clust_order - Lisa Eyler Zorrilla 17:59:25 23 Feb 2001
(2)
- Functional data - Phoebe 23:15:24 22 Feb 2001
(3)
- Resampling slices 256 X 256 to 128 X 128 - K S Gopinath 21:32:35 22 Feb 2001
(1)
- anatomical and functional data are oblique - Phoebe 13:29:20 22 Feb 2001
(0)
- 3drotate problem - bob cox 12:23:55 13 Feb 2001
(0)
- Realtime FIM - Jeff Orchard 16:08:53 09 Feb 2001
(1)
- Rotate/register oblique acquisition to straight 3D SPGR - Petr Hlustik 16:38:06 07 Feb 2001
(2)
- functional images - parth 14:30:43 07 Feb 2001
(1)
- a Question about Idealwave - Shiyong XU 21:01:35 06 Feb 2001
(3)
- AFNI processing pipeline basics - Jeff Orchard 20:09:38 05 Feb 2001
(4)
- to3d - Gyung-Ho Chung, M.D. 16:49:45 01 Feb 2001
(3)
- Re: to3d - bob cox 08:59:20 05 Feb 2001
(0)
- Re: to3d - Joe Sala 09:26:24 02 Feb 2001
(0)
- Re: to3d - crane 05:39:42 02 Feb 2001
(0)
- what should I do before using to3d -time:zt...? - shiguo Liu 08:22:39 01 Feb 2001
(1)
- reorder plug-in and ROIs - Luiz Pessoa 16:29:09 30 Jan 2001
(2)
- Temporal filtering - Jeff Orchard 16:59:02 29 Jan 2001
(3)
- 2x2 ANOVA and posthoc comparisons - Martin Paulus 15:33:55 26 Jan 2001
(4)
- Compiling AFNI on Linux Mandrake - Mike Parsons 14:33:30 24 Jan 2001
(1)
- *** NOTICE *** - Bob Cox 08:01:22 23 Jan 2001
(0)
- 3dvolreg with spgrs - Luiz Pessoa 20:32:33 22 Jan 2001
(4)
- blurring data - Mary Newsome 16:28:59 20 Jan 2001
(2)
- Credit where credit is due: 3dDeconvolve - Craig Stark 18:49:37 18 Jan 2001
(5)
- Real-time plugin - Jeff Orchard 13:10:23 18 Jan 2001
(1)
- HR, Respiration, and 3dDeconvolve? - Eli Merriam 14:40:22 17 Jan 2001
(0)
- 3dDeconvolve GLT question - Paul J. Reber 09:20:35 17 Jan 2001
(1)
- 3dDeconvolve and control condition - Karen Reinke 13:01:40 16 Jan 2001
(5)
- 3dculst is strange? ---batch mode and interactive mode - Shiyong Xu 03:56:55 13 Jan 2001
(1)
- Input stim functions sampled at multiple of 1/TR rate - B. Douglas Ward 15:17:06 12 Jan 2001
(6)
- degrees of freedom in ANOVA's with 3dregana - Hillary Schaefer 16:31:59 11 Jan 2001
(8)
- 3Ddeconvolve or FIM+? - Shiyong Xu 08:34:33 11 Jan 2001
(1)
- video projectors in MR environment - Jim Eliassen 16:11:23 09 Jan 2001
(3)
- co-registration for EPI image and T1 image? - Michael D. 21:25:36 08 Jan 2001
(1)
- How to interperate the color after 3dmerge? - Micheal.D 00:42:44 08 Jan 2001
(4)
- "combine"comfused a Chinese boy - question about merge and 3danova - Shiyong Xu 07:32:06 07 Jan 2001
(3)
- "combine"comfused a Chinese boy - question about merge and 3danova - Shiyong Xu 07:30:18 07 Jan 2001
(0)
- AFNI & FreeBSD - Giuseppe Pagnoni 10:35:51 05 Jan 2001
(1)
- AFNI permutation test plug-in update - Matthew Belmonte 17:36:42 04 Jan 2001
(1)
- ignoring ideal waveform points - Cathy Labas 13:52:43 28 Dec 2000
(1)
- 3dTSgen - Giorgio Ganis 19:07:15 21 Dec 2000
(1)
- ** NOTICE ** - Bob Cox 15:53:55 21 Dec 2000
(0)
- AFNI for beginners - Parth 17:45:12 20 Dec 2000
(0)
- Motion parameters - Paul J. Reber 18:47:16 14 Dec 2000
(12)
- 3dTcat - Denise Wu 01:59:09 13 Dec 2000
(1)
- Re: 3dTcat - B. Douglas Ward 13:16:56 13 Dec 2000
(0)
- potential conflict: 2dimreg, *then* 3dTcat - brian knutson 18:24:38 12 Dec 2000
(2)
- interaction question - Denise Wu 23:07:25 08 Dec 2000
(1)
- 3dANOVA3 -xmean and -xdiff options - Lisa Eyler Zorrilla 17:20:25 07 Dec 2000
(2)
- Volume registration of anatomies - Sally Durgerian 11:55:39 06 Dec 2000
(1)
- Performance correlates -- 3dDeconvolve - Jim Eliassen 11:09:24 06 Dec 2000
(0)
- cine loops in AFNI - Alex Shackman 11:42:26 04 Dec 2000
(3)
- AIR - Philippe Goldin 17:04:46 30 Nov 2000
(1)
- Re: AIR - Fred Dick 14:29:07 01 Dec 2000
(0)
- tran1D - Pamela Perschler 16:15:41 29 Nov 2000
(1)
- Spatially Filtering Masked Datasets [***reposted***] - Alex Shackman 17:34:08 27 Nov 2000
(5)
- Performance correlates -- 3dDeconvolve - Paul J. Reber 13:05:46 27 Nov 2000
(5)
- 3dTcat answer, at last - bob cox 19:13:38 24 Nov 2000
(1)
- thank you - Alex Shackman 10:46:21 27 Nov 2000
(0)
- NOTICE - bob cox 11:00:00 22 Nov 2000
(1)
- 3dmerge and "-1filter_expr" - Alex Shackman 17:36:13 21 Nov 2000
(1)
- 3drotate and functional datasets (artefacts etc.) - Florian Hauch 16:12:11 20 Nov 2000
(3)
- 3dTcat - Alex Shackman 11:23:55 20 Nov 2000
(2)
- Spatially Filtering Masked Datasets - Alex Shackman 13:18:51 17 Nov 2000
(0)
- Orientation of AFNI images - Mike Kerich 14:29:37 09 Nov 2000
(1)
- Images - Frank Hillary 15:26:53 07 Nov 2000
(1)
- valid variance estimation, degrees of freedom correction, and temporal autocorrelation - Eric Zarahn 16:48:13 31 Oct 2000
(7)
- 3dDeconvolve -- what is the noise? - Craig Stark 18:56:44 25 Oct 2000
(6)
- -iresp and -input1D in 3dDeconvolve - Craig Stark 16:48:31 23 Oct 2000
(1)
- Concerning Talairach markers: - Martin Paulus 17:20:17 18 Oct 2000
(1)
- 3dFWHM and Alphsim - Hillary Schaefer 12:10:08 06 Oct 2000
(3)
- group analysis correction - jill weisberg 17:20:22 03 Oct 2000
(1)
- 3dDeconvolve seg fault - Paul J. Reber 17:18:40 03 Oct 2000
(1)
- Simple Statistical Measures - Martin Paulus 12:11:25 02 Oct 2000
(1)
- RSFgen & 3dDeconvolve stuff - Eli Merriam 12:41:48 29 Sep 2000
(3)
- Re: Normalization of 3d+time - Paul J. Reber 13:44:42 28 Sep 2000
(2)
- More 3dDeconvolve -concat Qs - Paul J. Reber 22:03:11 26 Sep 2000
(3)
- 3dcalc problem -- bug? - Paul J. Reber 11:26:21 26 Sep 2000
(2)
- Cannot load plugins - Kelvin 03:52:19 21 Sep 2000
(3)
- Use of tpattern in TO3D - Dr. Dieter Kleinboehl 08:14:23 20 Sep 2000
(1)
- 3dDeconvolve before/after - Daniel Rowe 16:39:07 18 Sep 2000
(1)
- Pre-determined ROIs in Talairach space - Martin Paulus 20:44:56 14 Sep 2000
(2)
- 3dDetrend - Daniel Rowe 15:00:15 05 Sep 2000
(7)
- Plotting Average Time Series for an ROI - Luiz Pessoa 08:30:20 05 Sep 2000
(1)
- 3Ddeconvolve -concat - Jill Weisberg 19:46:08 01 Sep 2000
(1)
- multicollinearity - Luiz Pessoa 20:30:01 25 Aug 2000
(1)
- functional connectivity - Jerome Sanes 10:51:19 25 Aug 2000
(0)
- bshorts to briks revisited - Michael Parsons 09:33:24 25 Aug 2000
(1)
- 3dANOVA3 - Denise Wu 15:14:31 24 Aug 2000
(7)
- deconvolve with waver? - brian knutson 15:03:02 23 Aug 2000
(4)
- Rendering - Jim Eliassen 21:49:35 22 Aug 2000
(1)
- -ghits option with t-tests - Chris Krisky 11:08:59 21 Aug 2000
(2)
- Pre-testing designs with 3dDeconvolve - Paul J. Reber 11:47:13 11 Aug 2000
(6)
- smoothing - Giorgio Ganis 18:22:07 08 Aug 2000
(6)
- Again - overlapping (rapidly-presented) trials - Petr Hlustik 13:39:39 07 Aug 2000
(7)
- 2 slices OK.20 not? - 3dIncranial 20:02:13 02 Aug 2000
(2)
- 3dDeconvolve and -concat - Giorgio Ganis 15:50:32 02 Aug 2000
(1)
- 2 slice OK,20slices NOT - 3dIncranial 03:02:21 02 Aug 2000
(1)
- 2slices,can't 20 slices - 3dIncranial 02:56:49 02 Aug 2000
(1)
- set no-brain voxels of a 3d+time to zero? - Yu-Feng Zang 00:28:07 02 Aug 2000
(5)
- Variance maps - Sandra Kindermann 09:39:05 31 Jul 2000
(1)
- Changes to Programs 3dDeconvolve and plug_deconvolve - B. Douglas Ward 16:38:40 28 Jul 2000
(1)
- SPM-style analysis in AFNI - Michael Beauchamp 11:11:30 25 Jul 2000
(1)
- DICOM Images - Michael Beauchamp 10:14:37 25 Jul 2000
(0)
- More info on 3dFWHM - Lisa Eyler Zorrilla 19:16:11 24 Jul 2000
(3)
- 3dnudge and talairach norm - jill weisberg 12:58:06 24 Jul 2000
(1)
- 3dDeconvolve - general linear test - Stephanie Hevenor 16:02:35 21 Jul 2000
(1)
- AlphaSim interpretation- REPOST with Reformatted Table - Lisa Eyler Zorrilla 14:54:40 20 Jul 2000
(3)
- AlphaSim interpretation - Lisa Eyler Zorrilla 14:46:04 20 Jul 2000
(0)
- Groups, 3dFWHM & AlphaSim - Jim Eliassen 09:31:36 19 Jul 2000
(3)
- Confidence intervals - Rasmus Birn 15:27:25 13 Jul 2000
(1)
- 3dZeropad - Bob Cox 21:15:04 11 Jul 2000
(0)
- FWHM - James Patterson 17:52:17 10 Jul 2000
(3)
- Re: FWHM - B. Douglas Ward 09:43:09 11 Jul 2000
(2)
- Re: FWHM - Jim Eliassen 16:17:39 11 Jul 2000
(1)
- Re: FWHM - B. Douglas Ward 11:59:45 12 Jul 2000
(0)
- Writing a specific voxel, not just write center - Ted Steger 13:01:09 10 Jul 2000
(4)
- AlphaSim - James Patterson 07:35:19 09 Jul 2000
(1)
- Drawing ROI's - Greg Harrington 11:37:27 06 Jul 2000
(5)
- AFNI permutation-test plugin - Matthew Belmonte 03:50:06 05 Jul 2000
(3)
- 3Ddeconvolve X'X inversion error - Jim Eliassen 10:04:26 03 Jul 2000
(1)
- How to run AFNI under Solaris 2.6? - Jingang Xu 14:28:14 30 Jun 2000
(1)
- 3dmerge "bucket" - Zang Yu-Feng 03:45:39 30 Jun 2000
(1)
- afni format - BENDADA 08:43:18 29 Jun 2000
(2)
- Deconvolution and removing trends - Jim Eliassen 11:01:05 28 Jun 2000
(5)
- spatial smoothing - Ming Hsu 18:07:21 24 Jun 2000
(2)
- link - Ming Hsu 18:09:17 24 Jun 2000
(1)
- Re: link - bob cox 11:43:57 29 Jun 2000
(0)
- Byte ordering on "canonical" files - John Koger 13:38:01 21 Jun 2000
(3)
- AFNI newbie (again!) has two questions - Michael Harnadek 12:17:00 20 Jun 2000
(1)
- ORTs - Anne Wiser 10:36:31 14 Jun 2000
(1)
- Re: ORTs - B. Douglas Ward 09:12:23 16 Jun 2000
(0)
- statistical significance - Barbara Cerf-Ducastel 16:23:06 13 Jun 2000
(4)
- gaussian blur of a 3d+t dataset - Tim Souza 09:39:49 12 Jun 2000
(8)
- temporal smoothing of data - Anne Wiser 20:05:54 09 Jun 2000
(1)
- FIMing an average of runs vs. avering FIMed runs - Anne Wiser 20:02:41 09 Jun 2000
(2)
- inserting a covariate - Philippe Goldin 19:28:59 09 Jun 2000
(1)
- alphasim - Anne Wiser 16:46:44 08 Jun 2000
(2)
- afni vs medx - Aprajita Mohanty 17:13:16 05 Jun 2000
(3)
- Using the -rlt tag in 3dTcat to detrend - brian knutson 14:52:51 05 Jun 2000
(2)
- reorder - Aimee Nelson 11:14:09 05 Jun 2000
(2)
- correlate behavior with activation - Ming Hsu 13:32:38 02 Jun 2000
(1)
- removing linear trends with time - Jim Eliassen 14:00:38 24 May 2000
(2)
- max number of files in 3dANAVA - Chi Chen 07:48:47 23 May 2000
(1)
- Recent changes to 3dNLfim - B. Douglas Ward 10:08:11 22 May 2000
(0)
- FIM+: Command Line vs. Interactive - Lisa Eyler Zorrilla 14:48:29 16 May 2000
(2)
- 3dIntracranial parameters for MPRAGEs - Fred Dick 23:17:33 11 May 2000
(6)
- Making the Color Bar Meaningful - Lisa Eyler Zorrilla 19:08:51 08 May 2000
(3)
- to3d question - Krista Garver 13:03:43 08 May 2000
(4)
- 3dclust/rmm size - Fred Dick 17:07:58 04 May 2000
(4)
- 3dDeconvolve! - Paul J. Reber 09:56:20 04 May 2000
(3)
- AFNI BRICK, to/from DICOM 3 file transfer - Jim Nash 06:01:49 04 May 2000
(3)
- fit coef vs. % change - Anne Wiser 19:30:15 28 Apr 2000
(1)
- Command line version of AFNI fim+ - B. Douglas Ward 16:26:19 28 Apr 2000
(1)
- 3D registration base brick? - Chad Moritz 15:48:21 28 Apr 2000
(8)
- Averaged runs - Anne Wiser 14:44:20 26 Apr 2000
(3)
- talairaching and co-registration of images - David M Schnyer 15:59:28 21 Apr 2000
(2)
- AFNI running on a Xeon processor ? - Ed Maclin 14:15:43 13 Apr 2000
(1)
- Rendering an EPI Dataset - Lisa Eyler Zorrilla 18:25:41 11 Apr 2000
(2)
- 16-bit TrueColor - Bob Cox 14:44:47 11 Apr 2000
(0)
- Negative Signal Intensities after 3dvolreg - Lisa Eyler Zorrilla 19:48:46 05 Apr 2000
(1)
- transparent brains - Krista Garver 17:10:39 03 Apr 2000
(1)
- Wavelet Analysis of FMRI Time Series Data - B. Douglas Ward 09:49:26 29 Mar 2000
(0)
- Nudge XYZ - Lisa Eyler Zorrilla 17:58:24 28 Mar 2000
(7)
- 3dmaskdump - Ming Hsu 20:44:48 27 Mar 2000
(1)
- Linear contrasts? - Craig Stark 16:10:59 23 Mar 2000
(5)
- Command line version of FIM+ - Lisa Eyler Zorrilla 15:18:19 21 Mar 2000
(1)
- Mann Whitney - Anne Wiser 18:28:03 15 Mar 2000
(1)
- Partitioning Scan-to-Scan Variance: Saving Residuals - Alexander J. Shackman 13:26:41 14 Mar 2000
(11)
- export to ascii - Rob Tedesco 12:26:39 07 Mar 2000
(2)
- 3dFWHM and spatial correlation - Giorgio Ganis 10:54:17 02 Mar 2000
(3)