AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 16, 2013 06:22PM
> Is the first basis function of the SPMG2 analysis (sub-brick[0]) the activation
> removing the effect of the reaction time (becuase reaction time is run as a
> second regressor) or is the first basis sub-brick showing the activation regardless
> of the effect from other regressors like reaction time.

Using your result as an example:

# -- At sub-brick #66 'dual_hit#0_Coef' datum type is float: -20.3359 to 16.6942
# -- At sub-brick #68 'dual_hit#1_Coef' datum type is float: -45.7975 to 52.2615
# -- At sub-brick #70 'dual_hit#2_Coef' datum type is float: -6.18825 to 14.4791
# -- At sub-brick #72 'dual_hit#3_Coef' datum type is float: -26.8796 to 29.3508

the major amplitude effect from the 1st basis function in SPMG2 is sub-brick #66, and its RT modulation effect is sub-brick #70. The word "removing" in your phrase "removing the effect of the reaction time" is a misunderstanding. You can't remove the RT effect: what sub-brick #66 shows is the BOLD response amplitude that corresponds to the average RT value of this current. And the average RT value may vary to some extent across subjects, which may have impact on your group analysis strategy. For example, does the average RT value vary significantly across subjects? If so, it may warrants considering the average RT values as an explanatory variable at group level.

Gang
Subject Author Posted

SPMG2 model for group analysis

Anonymous User July 12, 2013 06:46PM

Re: SPMG2 model for group analysis

gang July 15, 2013 03:18PM

Re: SPMG2 model for group analysis

Anonymous User July 15, 2013 04:36PM

Re: SPMG2 model for group analysis

gang July 16, 2013 10:09AM

Re: SPMG2 model for group analysis

Anonymous User July 16, 2013 11:25AM

Re: SPMG2 model for group analysis

gang July 16, 2013 01:41PM

Re: SPMG2 model for group analysis

Anonymous User July 16, 2013 02:37PM

Re: SPMG2 model for group analysis

gang July 16, 2013 06:22PM

Re: SPMG2 model for group analysis

paranoidandroid April 21, 2015 05:58AM

Re: SPMG2 model for group analysis

gang April 23, 2015 02:18AM