AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 04, 2014 08:51PM
Hi Emily,

Scrubbing is just censoring, I think they were simply not aware
of it when they made up the word scrubbing.

The metrics they used for censoring are similar to what afni_proc.py
uses (the enorm, though one can also use outliers). Powers used
FD and DVARS.

afni_proc.py enorm: take motion derivatives (first difference), and then
the per-TR Euclidean norm: sqrt(sum squares).

afni_proc.py outliers: fraction of brain voxels that have outliers at that
point (see 3dToutcount -help for a description).

Powers FD: take motion derivatives (similar to enorm), but instead of
sqrt(sum squares) use sum(absolute values). Also, they scale the
rotations down slightly. I prefer the enorm to this.

Powers DVARS: (from what I recall) this is the same as AP's enorm,
except that while afni_proc.py uses the motion parameters, this
comes from the actual EPI time series. I like this metric, but have
not yet bothered to implement it in afni_proc.py (partially since no
one has asked for it).

Anyway, the main point of censoring with these metrics is to exclude
high-motion TRs from the regression. There are surely many good
metrics for doing so.

- rick
Subject Author Posted

Censoring Resting State Data: Example 9 from afni proc py

Emily February 04, 2014 02:28PM

Re: Censoring Resting State Data: Example 9 from afni proc py

rick reynolds February 04, 2014 09:49PM

Re: Censoring Resting State Data: Example 9 from afni proc py

Emily March 04, 2014 05:57PM

Re: Censoring Resting State Data: Example 9 from afni proc py

rick reynolds March 04, 2014 08:51PM

Re: Censoring Resting State Data: Example 9 from afni proc py

Emily March 05, 2014 10:20AM