AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
April 14, 2014 08:21PM
Dear Ziad,
I have two groups of subjects. And I get the subject.1D.dat and subject.niml.dset for each subject by using 3dVol2surf. I want to get mean value at each node from these two groups. In the old version of suma.doc, it tells to do as followed:
1deval -a 'DataSurf_s1.1D.dat[6]'
-b 'DataSurf_s2.1D.dat[6]'
-c 'DataSurf_s3.1D.dat[6]'
-expr '(a + b + c) / 3'
-index 'DataSurf_s1.1D.dat[0]'
> DataSurf_mean.1D.dat
So that I get the DataSurf_mean.1D.dat as the mean value at each node for a group of subject. And it is why I want to use the ScaleToMap, I want to show the DataSurf_mean.1D.dat in SUMA. To see, if there is something different in these two group.
I want to know how to get the mean value at each node from these two group by using subject.niml.dset. In my opinion, if i get the mean value at each node by using subject.niml.dset, I can show it directly by SUMA. But I am not sure how to use this kind of file( subject.niml.dset). Could you tell me how to get the mean value at each node for a number of subjects by using the niml.dset file,( get from the -out_niml opinion by 3dVol2Surf). Thanks very much!



Edited 1 time(s). Last edit at 04/14/2014 08:23PM by Linda.
Subject Author Posted

Problem about using ScaletoMap in SUMA?

Linda April 11, 2014 09:41AM

Re: Problem about using ScaletoMap in SUMA?

ziad April 14, 2014 01:50PM

Re: Problem about using ScaletoMap in SUMA?

yfh2013 April 14, 2014 08:16PM

Re: Problem about using ScaletoMap in SUMA?

Linda April 14, 2014 08:21PM

Re: Problem about using ScaletoMap in SUMA?

Linda April 14, 2014 10:37PM

Re: Problem about using ScaletoMap in SUMA?

ziad April 15, 2014 11:03AM

Re: Problem about using ScaletoMap in SUMA?

Linda April 15, 2014 11:36AM

Re: Problem about using ScaletoMap in SUMA?

ziad April 15, 2014 12:05PM

Re: Problem about using ScaletoMap in SUMA?

Linda April 15, 2014 12:54PM

Re: Problem about using ScaletoMap in SUMA?

nick April 16, 2014 07:58AM

Re: Problem about using ScaletoMap in SUMA?

nick April 16, 2014 07:53AM