AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 16, 2014 07:58AM
Linda Wrote:
-------------------------------------------------------
> But for the subject.niml.dset, I can not know
> which column contain the value I need. [...]
> The followed is the information I get from the
> SurfDsetInfo and 3dinfo.
> SurfDsetInfo
> v2s.MaskS_unsmooth_corr_movie_gb_11.nii.gz.lh.TS.n
> iml.dset
> [...]
> Data Element:
> dnel->vec_num (N_subsets): 1

this suggests there is just one column (sub brick) in the dataset.

> vec[0]:
> Column 0's type: Generic_Float
> Column 0's attribute does not exist.
> Column 0's label: Pear.Corr.
> 0.040472, 0.004588, ..., 0.048625,
> 0.041684, 0.037715
> No internal colormap.

The output ends here, also indicating that there is just one column.

> How about the ''3dcalc'' and '' 3dMean''?

As a first step I think you should figure out which data you are using. Are you sure you are using the right data as input?
If you want to use this file with 3dcalc you can just do "-a v2s.MaskS_unsmooth_corr_movie_gb_11.nii.gz.lh.TS.niml.dset", as there is only one column. Or, to be explicit, "-a v2s.MaskS_unsmooth_corr_movie_gb_11.nii.gz.lh.TS.niml.dset'[0]'" - that is with single quote, opening bracket, zero, closing bracket, single quote - should work as well.
Subject Author Posted

Problem about using ScaletoMap in SUMA?

Linda April 11, 2014 09:41AM

Re: Problem about using ScaletoMap in SUMA?

ziad April 14, 2014 01:50PM

Re: Problem about using ScaletoMap in SUMA?

yfh2013 April 14, 2014 08:16PM

Re: Problem about using ScaletoMap in SUMA?

Linda April 14, 2014 08:21PM

Re: Problem about using ScaletoMap in SUMA?

Linda April 14, 2014 10:37PM

Re: Problem about using ScaletoMap in SUMA?

ziad April 15, 2014 11:03AM

Re: Problem about using ScaletoMap in SUMA?

Linda April 15, 2014 11:36AM

Re: Problem about using ScaletoMap in SUMA?

ziad April 15, 2014 12:05PM

Re: Problem about using ScaletoMap in SUMA?

Linda April 15, 2014 12:54PM

Re: Problem about using ScaletoMap in SUMA?

nick April 16, 2014 07:58AM

Re: Problem about using ScaletoMap in SUMA?

nick April 16, 2014 07:53AM