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beau
April 15, 2014 11:08AM
Hi there,

I am trying to evaluate a hypothetical design in 3dDeconvolve and am receiving a confusing error:

"** FATAL ERROR: '-stim_times 1' value out of range 1..0 [nopt=18]"

My (numerous) stim_times files contain 6 runs, each lasting 580 seconds. TR is 1s.

Here is the (long) 3dDeconvolve command I am using:

3dDeconvolve -nodata 3480 1 -nfirst 10 -polort 2 -jobs 4 \
-x1D nodataoutput.xmat.1d \
-xjpeg nodataoutput.jpg \
-local_times \
-concat '1D: 0 580 1160 1740 2320 2900' \
-stim_times 1 stim_times_01_d1s1.1D 'TENT(0,14,8)' \
-stim_times 2 stim_times_02_d1s2.1D 'TENT(0,14,8)' \
-stim_times 3 stim_times_03_d1s3.1D 'TENT(0,14,8)' \
-stim_times 4 stim_times_04_d1s4.1D 'TENT(0,14,8)' \
-stim_times 5 stim_times_05_d1s5.1D 'TENT(0,14,8)' \
-stim_times 6 stim_times_06_d1s6.1D 'TENT(0,14,8)' \
-stim_times 7 stim_times_07_d1s7.1D 'TENT(0,14,8)' \
-stim_times 8 stim_times_08_d1s8.1D 'TENT(0,14,8)' \
-stim_times 9 stim_times_09_d1s9.1D 'TENT(0,14,8)' \
-stim_times 10 stim_times_10_d2s1.1D 'TENT(0,14,8)' \
-stim_times 11 stim_times_11_d2s2.1D 'TENT(0,14,8)' \
-stim_times 12 stim_times_12_d2s3.1D 'TENT(0,14,8)' \
-stim_times 13 stim_times_13_d2s4.1D 'TENT(0,14,8)' \
-stim_times 14 stim_times_14_d2s5.1D 'TENT(0,14,8)' \
-stim_times 15 stim_times_15_d2s6.1D 'TENT(0,14,8)' \
-stim_times 16 stim_times_16_d2s7.1D 'TENT(0,14,8)' \
-stim_times 17 stim_times_17_d2s8.1D 'TENT(0,14,8)' \
-stim_times 18 stim_times_18_d1s1i.1D 'TENT(0,14,8)' \
-stim_times 19 stim_times_19_d1s2m.1D 'TENT(0,14,8)' \
-stim_times 20 stim_times_20_d1s3i.1D 'TENT(0,14,8)' \
-stim_times 21 stim_times_21_d1s4m.1D 'TENT(0,14,8)' \
-stim_times 22 stim_times_22_d1s5m.1D 'TENT(0,14,8)' \
-stim_times 23 stim_times_23_d1s6m.1D 'TENT(0,14,8)' \
-stim_times 24 stim_times_24_d1s7i.1D 'TENT(0,14,8)' \
-stim_times 25 stim_times_25_d1s8i.1D 'TENT(0,14,8)' \
-stim_times 26 stim_times_26_d1s8b.1D 'TENT(0,14,8)' \
-stim_times 27 stim_times_27_d1s9i.1D 'TENT(0,14,8)' \
-stim_times 28 stim_times_28_d2s1i.1D 'TENT(0,14,8)' \
-stim_times 29 stim_times_29_d2s2m.1D 'TENT(0,14,8)' \
-stim_times 30 stim_times_30_d2s3alt.1D 'TENT(0,14,8)' \
-stim_times 31 stim_times_31_d2s4m.1D 'TENT(0,14,8)' \
-stim_times 32 stim_times_32_d2s5i.1D 'TENT(0,14,8)' \
-stim_times 33 stim_times_33_d2s6i.1D 'TENT(0,14,8)' \
-stim_times 34 stim_times_34_d2s7m.1D 'TENT(0,14,8)' \
-stim_times 35 stim_times_35_d2s8m.1D 'TENT(0,14,8)'


An example stim_times file (generated by make_random_timing.py):

177.4 485.8
44.3 301.0
11.1 146.8
153.2 255.2
199.4 543.4
69.8 547.0

Any insight appreciated!

Thanks,
Beau
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Subject Author Posted

3dDeconvolve -nodata error

beau April 15, 2014 11:08AM

Re: 3dDeconvolve -nodata error

rick reynolds April 15, 2014 11:15AM

Re: 3dDeconvolve -nodata error

ziad April 15, 2014 11:15AM

Re: 3dDeconvolve -nodata error

beau April 15, 2014 11:50AM

Re: 3dDeconvolve -nodata error

rick reynolds April 15, 2014 12:03PM