Hi Peter,

Whoa. Really liking 3dMVM. We've made a script that is running but it appears to have hit a long pause. Specifically:

Reading input files now...

If the program hangs here for more than, for example, half an hour,
kill the process because the model specification or the GLT coding
is likely inappropriate.

[1] "Great, test run passed at voxel (53, 95, 75)!"
[1] "Start to compute 151 slices along Z axis. You can monitor the progress"
[1] "and estimate the total run time as shown below."
[1] "04/16/14 10:33:34.188"

Attaching package: ‘snow’

The following objects are masked from ‘package:parallel’:

clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, clusterSplit, makeCluster, parApply,
parCapply, parLapply, parRapply, parSapply, splitIndices,
stopCluster

It's been at this part for over a half hour. It looks like our model is okay but that attaching certain packages in R is masking the functionality of others. Advice on how to proceed?

Here's the script:

# design = nature

3dMVM -prefix perfusionANOVA -jobs 4 \
-model Environment \
-wsVars Time \
-num_glt 3 \
-gltLabel 1 EnvironmentxTime -gltCode 1 'Environment : 1*Nature -1*Urban Time : 1*Before -1*After' \
-gltLabel 2 EnvironmentMainEffect -gltCode 2 'Environment : 1*Nature -1*Urban' \
-gltLabel 3 TimeMainEffect -gltCode 3 'Time : 1*Before -1*After' \
-dataTable \
Subj Environment Time InputFile \
s1 Nature Before 21_pre_normCBFWARP+tlrc \
s1 Nature After 21_post_normCBFWARP+tlrc \
s2 Nature Before 12_pre_normCBFWARP+tlrc \
s2 Nature After 12_post_normCBFWARP+tlrc \
s3 Nature Before 09_pre_normCBFWARP+tlrc \
s3 Nature After 09_post_normCBFWARP+tlrc \
s4 Nature Before 05_pre_normCBFWARP+tlrc \
s4 Nature After 05_post_normCBFWARP+tlrc \
s5 Nature Before 06_pre_normCBFWARP+tlrc \
s5 Nature After 06_pre_normCBFWARP+tlrc \
s6 Nature Before 11_pre_normCBFWARP+tlrc \
s6 Nature After 11_post_normCBFWARP+tlrc \
s7 Nature Before 17_pre_normCBFWARP+tlrc \
s7 Nature After 17_post_normCBFWARP+tlrc \
s8 Nature Before 19_pre_normCBFWARP+tlrc \
s8 Nature After 19_post_normCBFWARP+tlrc \
s9 Nature Before 02_pre_normCBFWARP+tlrc \
s9 Nature After 02_post_normCBFWARP+tlrc \
s10 Nature Before 10_pre_normCBFWARP+tlrc \
s10 Nature After 10_post_normCBFWARP+tlrc \
s11 Nature Before 27_pre_normCBFWARP+tlrc \
s11 Nature After 27_post_normCBFWARP+tlrc \
s12 Nature Before 28_pre_normCBFWARP+tlrc \
s12 Nature After 28_post_normCBFWARP+tlrc \
s13 Nature Before 29_pre_normCBFWARP+tlrc \
s13 Nature After 29_post_normCBFWARP+tlrc \
s14 Nature Before 31_pre_normCBFWARP+tlrc \
s14 Nature After 31_post_normCBFWARP+tlrc \
s15 Nature Before 37_pre_normCBFWARP+tlrc \
s15 Nature After 37_post_normCBFWARP+tlrc \
s16 Urban Before 01_pre_normCBFWARP+tlrc \
s16 Urban After 01_post_normCBFWARP+tlrc \
s17 Urban Before 03_pre_normCBFWARP+tlrc \
s17 Urban After 03_post_normCBFWARP+tlrc \
s18 Urban Before 14_pre_normCBFWARP+tlrc \
s18 Urban After 14_post_normCBFWARP+tlrc \
s19 Urban Before 15_pre_normCBFWARP+tlrc \
s19 Urban After 15_post_normCBFWARP+tlrc \
s20 Urban Before 16_pre_normCBFWARP+tlrc \
s20 Urban After 16_post_normCBFWARP+tlrc \
s21 Urban Before 18_pre_normCBFWARP+tlrc \
s21 Urban After 18_post_normCBFWARP+tlrc \
s22 Urban Before 23_pre_normCBFWARP+tlrc \
s22 Urban After 23_post_normCBFWARP+tlrc \
s23 Urban Before 22_pre_normCBFWARP+tlrc \
s23 Urban After 22_post_normCBFWARP+tlrc \
s24 Urban Before 26_pre_normCBFWARP+tlrc \
s24 Urban After 26_post_normCBFWARP+tlrc \
s25 Urban Before 07_pre_normCBFWARP+tlrc \
s25 Urban After 07_post_normCBFWARP+tlrc \
s26 Urban Before 13_pre_normCBFWARP+tlrc \
s26 Urban After 13_post_normCBFWARP+tlrc \
s27 Urban Before 32_pre_normCBFWARP+tlrc \
s27 Urban After 32_post_normCBFWARP+tlrc \
s28 Urban Before 34_pre_normCBFWARP+tlrc \
s28 Urban After 34_post_normCBFWARP+tlrc \
s29 Urban Before 36_pre_normCBFWARP+tlrc \
s29 Urban After 36_post_normCBFWARP+tlrc \
s30 Urban Before 38_pre_normCBFWARP+tlrc \
s30 Urban After 38_post_normCBFWARP+tlrc