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Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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pshuk
July 03, 2014 12:29PM
I am getting this error message whenever I execute my 3dMVM script.
-------------------------------------------------------------------------------------------
If the program hangs here for more than, for example, half an hour,
kill the process because the model specification or the GLT coding
is likely inappropriate.
-------------------------------------------------------

Here is my 3dMVM script looks like:
#!/bin/tcsh
set grp1 = CON_1
set grp2 = PSP_1
set data1 = /mnt/Processing1/Priyank/RESULTS_motion1/CON_1
set data2 = /mnt/Processing1/Priyank/RESULTS_motion1/PSP_1
3dMVM -prefix /mnt/Processing1/Priyank/ANALYSIS/PSP/3dMVM.WB.CON_1-PSP_1 -jobs 4 \
-bsVars 'Group*task' \
-num_glt 5 \
-gltLabel 1 CON_1_Mean -gltCode 1 'Group : 1*CON_1' \
-gltLabel 2 PSP_1_Mean -gltCode 2 'Group : 1*PSP_1' \
-gltLabel 3 CON_1-PSP_1 -gltCode 3 'Group : 1*CON_1 -1*PSP_1' \
-gltLabel 4 CON_1-PSP_1_same_vis -gltCode 4 'task : 1*same_vis Group : 1*CON_1 -1*PSP_1' \
-gltLabel 5 CON_1-PSP_1_same_nv -gltCode 5 'task : 1*same_nv Group : 1*CON_1 -1*PSP_1' \
-dataTable \
Subj Group task InputFile \
CON_033_1 CON_1 same_vis /mnt/Processing1/Priyank/RESULTS_motion1/CON_1/CON_033_1/stats_blur4.CON_033_1+tlrc'[same_vis#0_Coef]' \
CON_033_1 CON_1 same_nv /mnt/Processing1/Priyank/RESULTS_motion1/CON_1/CON_033_1/stats_blur4.CON_033_1+tlrc'[same_nv#0_Coef]' \
......
.....
.....
PSP_008_1 PSP_1 same_nv /mnt/Processing1/Priyank/RESULTS_motion1/PSP_1/PSP_008_1/stats_blur4.PSP_008_1+tlrc'[same_nv#0_Coef]' \
PSP_013_1 PSP_1 same_vis /mnt/Processing1/Priyank/RESULTS_motion1/PSP_1/PSP_013_1/stats_blur4.PSP_013_1+tlrc'[same_vis#0_Coef]' \
PSP_013_1 PSP_1 same_nv /mnt/Processing1/Priyank/RESULTS_motion1/PSP_1/PSP_013_1/stats_blur4.PSP_013_1+tlrc'[same_nv#0_Coef]'

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Subject Author Posted

3dMVM scripting issue:

pshuk July 03, 2014 12:29PM

Re: 3dMVM scripting issue:

gang July 03, 2014 01:03PM