AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
July 16, 2014 11:15AM
Hi Daniel -

I'm not concerned about the memory issues, since most of the time I'm the sole user on a server with 128 GB of memory, almost all of it free, running a 64 bit OS running 64 bit AFNI. But to be conclusive I've used the following AFNI_ATLAS_LIST setting in my .afnirc:

default (no AFNI_ATLAS_LIST definition)
ALL
TT_Daemon
TT_Daemon,DD_Desai_MPM

The result is the same in every case: if you get at whereami via right click in display window, you get something like this:

[www.dropbox.com]

If you do it from the cluster report, you get this:

[www.dropbox.com]

Here's the console output from when you use the cluster report WamI button:
++ Writing mask dataset ./Clust_mask+tlrc.BRIK
*+ WARNING: Over-writing dataset ./Clust_mask+tlrc.HEAD
 + 3dclust -1Dformat -nosum -1dindex 0 -1tindex 1 -2thresh -3.922 3.922 -inmask -dxyz=1 -savemask Clust_mask 1.01 20 /labs/Semantic_Cognition/semantic_root/worktemp/broda/abscon__b38_mni.nii.gz
++ Running WamI command: 
 + /home/shanusmagnus/afni/whereami -omask ./Clust_mask+tlrc.HEAD
Does anything look odd? To check whether Clust_mask was sensible, I loaded it as an overlay and yes, the clusters are where they should be, and have integral values corresponding to cluster number. I don't know what else to do to troubleshoot, and I'm still not clear what I _should_ be getting in the cluster report. Could you (or someone) provide a screenshot of what a correctly-functioning output of pushing the "WamI" should be? Could you confirm that what I'm seeing is either erroneous, or not?

Thanks,

Shane
Subject Author Posted

WamI button in "Clusterize" report: what's it for?

shanusmagnus July 11, 2014 03:10PM

Re: WamI button in "Clusterize" report: what's it for?

rick reynolds July 11, 2014 04:03PM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 11, 2014 04:15PM

Re: WamI button in "Clusterize" report: what's it for?

rick reynolds July 11, 2014 04:29PM

Re: WamI button in "Clusterize" report: what's it for?

Daniel Glen July 11, 2014 08:08PM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 14, 2014 11:22AM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 15, 2014 10:04PM

Re: WamI button in "Clusterize" report: what's it for?

Daniel Glen July 16, 2014 09:40AM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 16, 2014 11:15AM

Re: WamI button in "Clusterize" report: what's it for?

Daniel Glen July 16, 2014 03:23PM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 16, 2014 03:58PM

Re: WamI button in "Clusterize" report: what's it for?

Daniel Glen July 16, 2014 04:21PM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 16, 2014 04:24PM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 16, 2014 05:02PM

Re: WamI button in "Clusterize" report: what's it for?

Daniel Glen July 21, 2014 03:33PM