AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 16, 2014 03:23PM
The correct output is the same as the command line of whereami with the -omask output that is similar to slide 60 (or thereabouts) in the class documentation here:

http://afni.nimh.nih.gov/pub/dist/edu/latest/afni10_volreg_talairach/

While it's very slow on the system, I just tried this with all the atlases, but it still works as expected. The data should be in a standard space like TLRC or MNI space. Use the SaveMsk button in the Clusterize report menu as input to whereami -omask and see if you get similar output on the command line. Before I guess what might be going on, I would also appreciate if you could post the output of "afni -ver", so we can know which platform and compile date.
Subject Author Posted

WamI button in "Clusterize" report: what's it for?

shanusmagnus July 11, 2014 03:10PM

Re: WamI button in "Clusterize" report: what's it for?

rick reynolds July 11, 2014 04:03PM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 11, 2014 04:15PM

Re: WamI button in "Clusterize" report: what's it for?

rick reynolds July 11, 2014 04:29PM

Re: WamI button in "Clusterize" report: what's it for?

Daniel Glen July 11, 2014 08:08PM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 14, 2014 11:22AM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 15, 2014 10:04PM

Re: WamI button in "Clusterize" report: what's it for?

Daniel Glen July 16, 2014 09:40AM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 16, 2014 11:15AM

Re: WamI button in "Clusterize" report: what's it for?

Daniel Glen July 16, 2014 03:23PM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 16, 2014 03:58PM

Re: WamI button in "Clusterize" report: what's it for?

Daniel Glen July 16, 2014 04:21PM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 16, 2014 04:24PM

Re: WamI button in "Clusterize" report: what's it for?

shanusmagnus July 16, 2014 05:02PM

Re: WamI button in "Clusterize" report: what's it for?

Daniel Glen July 21, 2014 03:33PM