AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 31, 2014 04:08PM
Dear Ziad and Afni Experts,

I'm trying to compare cortical thickness for the affected hemisphere of a patient group to their unaffected hemisphere (the affected hemisphere is sometimes left and sometimes right, so it requires surface node/vertex symmetery). Is it possible to use SUMA_Make_Spec_FS to generate a SUMA surface from the lh.rh.sphere.reg (it's the output from freesurfer's recon-all with -contrasurfreg flag) ? I've already converted the .reg surface to .asc using mris_convert, but then running the make_spec does not seem to recognize/convert it to niml format as it does for ipsilateral surfaces. As an alternative, after generating both lh and rh surfaces in SUMA, is there a way to reorder the nodes of the right hemisphere to match the anatomy of the left hemi?

thanks in advance,
~michael
Subject Author Posted

contralateral surfaces in SUMA

michael tobia July 31, 2014 04:08PM

Re: contralateral surfaces in SUMA

ziad August 01, 2014 11:36PM

Re: contralateral surfaces in SUMA

nick August 04, 2014 08:14AM

Re: contralateral surfaces in SUMA

michael tobia August 04, 2014 03:13PM