AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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norrismm
August 07, 2014 05:09PM
When I add age " age : " to my GLTs it gets hung up in the section where it says "if the program hangs..." The groups are different in terms of age and have been centered within-group prior to input. I am trying to see if there is a correlation between age and a specific contrast. In GLT #2 I'd like to see if there is a correlation of age with the difference between the remitting groups at the first visit on the circle condition.

Is there something that I am missing or should I wait longer? If I remove the age covariate from my GLTs it sails right on through. 


3dMVM  -prefix b_MVM_r2 -jobs 3 \
-bsVars 'remission+age' \
-wsVars "visit*condition" \
-qVars "age" \
-mask TT_icbm452_lores+tlrc. \
-num_glt 10 \
-gltLabel 1 rs_vs_nr -gltCode 1 'remission : 1*rs -1*nr' \
-gltLabel 2 v1_C -gltCode 2 'remission : 1*rs -1*nr visit : 1*v1 condition : 1*circ' \
-gltLabel 3 v2_C -gltCode 3 'remission : 1*rs -1*nr visit : 1*v2 condition : 1*circ' \
-gltLabel 4 v3_C -gltCode 4 'remission : 1*rs -1*nr visit : 1*v3 condition : 1*circ' \
-gltLabel 5 v1_E -gltCode 5 'remission : 1*rs -1*nr visit : 1*v1 condition : 1*emot' \
-gltLabel 6 v2_E -gltCode 6 'remission : 1*rs -1*nr visit : 1*v2 condition : 1*emot' \
-gltLabel 7 v3_E -gltCode 7 'remission : 1*rs -1*nr visit : 1*v3 condition : 1*emot' \
-gltLabel 8 v1_N -gltCode 8 'remission : 1*rs -1*nr visit : 1*v1 condition : 1*neut' \
-gltLabel 9 v2_N -gltCode 9 'remission : 1*rs -1*nr visit : 1*v2 condition : 1*neut' \
-gltLabel 10 v3_N -gltCode 10 'remission : 1*rs -1*nr visit : 1*v3 condition : 1*neut' \
-dataTable \
Subj	remission	age	visit	condition	InputFile \
s1-0001	nr	3.01	v1	circ	1-0001-1_circ_werr+tlrc. \
s1-0012	nr	4.71	v1	circ	1-0012-1_circ_werr+tlrc. \
s1-0063	nr	-6.69	v1	circ	1-0063-1_circ_werr+tlrc. \
...
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Subject Author Posted

3dMVM GLT Help

norrismm August 07, 2014 05:09PM

Re: 3dMVM GLT Help

gang August 08, 2014 09:40AM

Re: 3dMVM GLT Help

norrismm August 08, 2014 10:23AM