AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 25, 2014 12:17PM
Hi Rick, thanks yes I noticed that right after i sent you the message . I have a problem though about the type of output file, they are BRIK file (mean.brain.corr+tlrc.BRIK) and (mean.brain.corr+tlrc.HEAD) ! is that because I used the nifti file not tlrc file as input ? and also my mask file was in hdr. so I am not sure if I can use hdr and nifti file in these commands as input. you could see how it looks like as below:

3dTnorm -prefix unit.data DATA.nii
3dmaskave -quiet -mask BRAIN_MASK.hdr unit.data+tlrc.BRIK > brain.mean.1D
3dTcorr1D -prefix mean.brain.corr unit.data+tlrc.BRIK brain.mean.1D

So as you saind the results should be at mean.brain.corr+tlrc.BRIK?but how can i read a BRIK file?

Thanks,
Aral
Subject Author Posted

Global connectivity with instacorr

aral.ahmadi August 19, 2014 11:45AM

Re: Global connectivity with instacorr

rick reynolds August 19, 2014 12:14PM

Re: Global connectivity with instacorr

aral.ahmadi August 19, 2014 01:59PM

Re: Global connectivity with instacorr

rick reynolds August 19, 2014 09:48PM

Re: Global connectivity with instacorr

rick reynolds August 20, 2014 12:46PM

Re: Global connectivity with instacorr

aral.ahmadi August 25, 2014 10:30AM

Re: Global connectivity with instacorr

rick reynolds August 25, 2014 11:37AM

Re: Global connectivity with instacorr

aral.ahmadi August 25, 2014 12:17PM

Re: Global connectivity with instacorr

rick reynolds August 25, 2014 12:42PM

Re: Global connectivity with instacorr

aral.ahmadi August 25, 2014 01:17PM

Re: Global connectivity with instacorr

aral.ahmadi August 25, 2014 04:24PM

Re: Global connectivity with instacorr

rick reynolds August 25, 2014 04:42PM

Re: Global connectivity with instacorr

aral.ahmadi August 25, 2014 04:56PM

Re: Global connectivity with instacorr

aral.ahmadi August 28, 2014 10:31AM

Re: Global connectivity with instacorr

aral.ahmadi August 28, 2014 11:37AM

Re: Global connectivity with instacorr

rick reynolds August 29, 2014 10:18AM