AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
August 22, 2014 03:28PM
Hi Matt,

Most programs don't respect the additional AFNI information in the NIFTI header. Since you can write NIFTI files from most AFNI programs, you could break the GLM results up using 3dbucket and some creative looping (in bash here):

for aNumber in 0 2 4 6 8 10
do
    3dbucket -prefix glm.$aNumber.nii GLM+orig"[${aNumber}]"
done

You'll need to modify the numbers to match the sub-bricks you want to pull out. Let me know if that does it for you. I'll leave it to the AFNI team to decide whether to modify 3dAFNItoNIFTI.

-PM



Edited 3 time(s). Last edit at 08/22/2014 03:30PM by Peter Molfese.
Subject Author Posted

3dAFNItoNIFTI and afni_proc.py outputs

Matt Weber August 22, 2014 01:49PM

Re: 3dAFNItoNIFTI and afni_proc.py outputs

Peter Molfese August 22, 2014 03:28PM

Re: 3dAFNItoNIFTI and afni_proc.py outputs

rick reynolds August 22, 2014 04:40PM