AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
August 22, 2014 03:42PM
Hi,

Can you give us your entire afni_proc.py script? Is there anything unique about this one subject's anatomy or scan - such as partial coverage? Most other subjects look good after processing?

You can try using uber_align_test.py to try out different cost functions between the EPI and anatomical, once you've found one you can add options to the processing script with the flag -align_opts_aea

-PM
Subject Author Posted

poor alignment after align_epi_anat.py

jgowin August 22, 2014 02:26PM

Re: poor alignment after align_epi_anat.py

Peter Molfese August 22, 2014 03:42PM

Re: poor alignment after align_epi_anat.py

jgowin August 22, 2014 03:52PM

Re: poor alignment after align_epi_anat.py

rick reynolds August 24, 2014 08:40PM

Re: poor alignment after align_epi_anat.py

jgowin August 25, 2014 05:31PM

Re: poor alignment after align_epi_anat.py

rick reynolds August 25, 2014 08:47PM

Re: poor alignment after align_epi_anat.py

jgowin August 27, 2014 09:51AM

Re: poor alignment after align_epi_anat.py

rick reynolds August 27, 2014 02:53PM