AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
September 02, 2014 08:55AM
Hi Uday,

If you can read the shared directory in real-time (without
too much lag), then you can run afni in realtime mode to
construct datasets, do motion correction, and compute ROI
averages per TR.

Also, realtime_receiver.py can open a TCP connection to
afni (or show you how to do it) to receive the motion
parameters and ROI averages each TR. That program is
meant to be a template for you to play around with.

Start by getting used to AFNI's realtime system without
using the scanner, i.e. using existing data. See the
AFNI_data6 sample data under realtime.demos. And focus
on demo.2, which includes feedback:

http://afni.nimh.nih.gov/pub/dist/edu/data/CD.expanded/AFNI_data6/realtime.demos/demo.2.fback.0.README

Please let me know how it goes.

- rick
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Subject Author Posted

rtfmri with AFNI

udaykurkure August 29, 2014 05:47PM

Re: rtfmri with AFNI

rick reynolds September 02, 2014 08:55AM

Re: rtfmri with AFNI

udaykurkure September 03, 2014 05:42PM

Re: rtfmri with AFNI

rick reynolds September 03, 2014 09:01PM

Re: rtfmri with AFNI

udaykurkure September 10, 2014 11:11AM

Re: rtfmri with AFNI

rick reynolds September 10, 2014 03:53PM