AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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skeedy
September 03, 2014 05:51PM
I am for the first time trying to use 3dMVM and to get started, asking for only a few factors to be analyzed. I cannot figure out how to get past this error message:

Error in parse(text = x) : <text>:1:9: unexpected symbol
1: Beta ~ 2Group
^
Calls: as.formula ... formula -> formula.character -> formula -> eval -> parse
Execution halted



This is my script (truncated to spare you):

3dMVM -prefix Motion -jobs 1 \
-bsVars 2Group \
-wsVars Difficulty \
-SC \
-wsE2 \
-wsMVT \
-num_glt 7 \
-gltLabel 1 Gp_at_easy -gltCode 1 '2Group : 1*Pt -1*Ctl Difficulty : 1*Easy' \
-gltLabel 2 Gp_at_med -gltCode 2 '2Group : 1*Pt -1*Ctl Difficulty : 1*Medium' \
-gltLabel 3 Gp_at_hard -gltCode 3 '2Group : 1*Pt -1*Ctl Difficulty : 1*Hard' \
-gltLabel 4 Ctl_EvM -gltCode 4 'Difficulty : 1*Easy -1*Medium 2Group : 1*Ctl' \
-gltLabel 5 Ctl_MvH -gltCode 5 'Difficulty : 1*Medium -1*Hard 2Group : 1*Ctl' \
-gltLabel 6 Pt_EvM -gltCode 6 'Difficulty : 1*Easy -1*Medium 2Group : 1*Pt' \
-gltLabel 7 Pt_MvH -gltCode 7 'Difficulty : 1*Medium -1*Hard 2Group : 1*Ctl' \
-dataTable \
Subj 2Group 3Group Time Task Difficulty InputFile \
TEA001 Pt Acute BL Motion Easy ../TEA_001/TEA001.m.results/stats.TEA001.m+tlrc'[1]' \
TEA001 Pt Acute BL Motion Medium ../TEA_001/TEA001.m.results/stats.TEA001.m+tlrc'[7]' \
TEA001 Pt Acute BL Motion Hard ../TEA_001/TEA001.m.results/stats.TEA001.m+tlrc'[4]' \
TEA002 Pt Acute BL Motion Easy ../TEA_002/TEA002.m.results/stats.TEA002.m+tlrc'[1]' \
TEA002 Pt Acute BL Motion Medium ../TEA_002/TEA002.m.results/stats.TEA002.m+tlrc'[7]' \
TEA002 Pt Acute BL Motion Hard ../TEA_002/TEA002.m.results/stats.TEA002.m+tlrc'[4]' \
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Subject Author Posted

3dMVM error help

skeedy September 03, 2014 05:51PM

Re: 3dMVM error help

tross September 04, 2014 10:12AM

Re: 3dMVM error help

norrismm September 05, 2014 09:54AM

Re: 3dMVM error help

skeedy September 06, 2014 12:29AM