AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 09, 2014 09:05PM
Hi Dane,

I wanted the 3dinfo output from the dataset that you were
showing, which I guess is the third one. But I actually
expected it to be the output from 3dttest++. You mention
doing a Z->R conversion after 3dttest++, and since that
label has not changed, the conversion was presumably done
on sub-brick 0 from the 3dttest++ result, is that correct?
So you converted the mean z-score from the group test back
to R, which is okay.

But group-level significance thresholding should not come
from that volume, but more likely from sub-brick #1 (from
the 3dttest++ result), the actual t-stat from the main test.
The average group value (Z or R in this case) does not show
group-level significance, and therefore does not provide a
p-value (at the group level).

- rick
Subject Author Posted

Context Dependent FC / PPI Analysis Help

d6anders September 04, 2014 11:09PM

Re: Context Dependent FC / PPI Analysis Help

d6anders September 07, 2014 11:30PM

Re: Context Dependent FC / PPI Analysis Help

gang September 08, 2014 10:21AM

Re: Context Dependent FC / PPI Analysis Help

d6anders September 08, 2014 11:33PM

Re: Context Dependent FC / PPI Analysis Help

rick reynolds September 09, 2014 10:11AM

Re: Context Dependent FC / PPI Analysis Help

d6anders September 09, 2014 01:53PM

Re: Context Dependent FC / PPI Analysis Help

rick reynolds September 09, 2014 02:07PM

Re: Context Dependent FC / PPI Analysis Help

d6anders September 09, 2014 05:50PM

Re: Context Dependent FC / PPI Analysis Help

rick reynolds September 09, 2014 09:05PM

Re: Context Dependent FC / PPI Analysis Help

d6anders September 09, 2014 10:31PM

Re: Context Dependent FC / PPI Analysis Help

rick reynolds September 09, 2014 11:22PM