AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 05, 2014 08:19PM
Hello,

I am experiencing a weird phenomenon with adwarp. I created several ROIs in the frontal lobe and medial temporal lobe in AC-PC space. After manually Talairaching the subject, I adwarped the ROI file to tlrc space.

adwarp -apar Ax_T1_SPGR+tlrc -dpar ROIs+acpc -prefix ROIs

When I load the new ROI+tlrc as an overlay, the ROIs now appear in the cerebellum. :(

I thought of the stupid errors that might cause this: reconstructing the dicoms incorrectly; accidentally flipping the anterior/posterior markers in the Talairaching step.

These mistakes did not happen. I double checked.

Any idea what is the matter? My build date is Nov 23, 2012 if that helps.

Regards,
Christine
Subject Author Posted

adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 05, 2014 08:19PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 05, 2014 09:37PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 08, 2014 12:12PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 08, 2014 01:53PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 09, 2014 04:57PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 09, 2014 05:12PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 12, 2014 12:28PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 12, 2014 12:54PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 12, 2014 01:26PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 15, 2014 11:50AM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 17, 2014 06:19PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 17, 2014 07:45PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 17, 2014 08:57PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 18, 2014 12:52PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 18, 2014 02:53PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 18, 2014 02:55PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 18, 2014 10:32PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 19, 2014 01:50PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 19, 2014 05:24PM