AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
September 08, 2014 12:12PM
Hi Rick,

It could be an orientation problem, though I looked at all the datasets and see that they are in RAI. I did "View Images" in to3d and made sure the dicoms were being imported correctly. I may be missing something here...

Next, I transformed the anatomy to AC-PC space and made a copy of it for drawing the ROIs (Dataset Copy: options: fim, datafill->ZeroAll). I drew the 6 ROIs, which are just six single individual voxels in my case. They are in 6 different spots in the frontal lobe and medial temporal lobes. Next, I transformed the AC-PC anatomy to talairach and then adwarped the ROIs to Talairach space.

I would be happy to upload the scans. Which of these steps would you like the files for?

Best,
Christine
Subject Author Posted

adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 05, 2014 08:19PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 05, 2014 09:37PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 08, 2014 12:12PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 08, 2014 01:53PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 09, 2014 04:57PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 09, 2014 05:12PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 12, 2014 12:28PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 12, 2014 12:54PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 12, 2014 01:26PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 15, 2014 11:50AM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 17, 2014 06:19PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 17, 2014 07:45PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 17, 2014 08:57PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 18, 2014 12:52PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 18, 2014 02:53PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 18, 2014 02:55PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 18, 2014 10:32PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 19, 2014 01:50PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 19, 2014 05:24PM