AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 12, 2014 12:54PM
Hi Christine,

Sorry if I was not clear about posting the response.

Given what you are doing, it sounds like the advantage
of ACPC space is to get the brains mostly aligned for
voxel selection could even be had in standard space.
So both ORIG and TLRC views are viable alternatives.

But if that seems daunting, it is feasible to extract the
coordinates of each electrode, and warp the coordinates
to standard space. Normally that would be trivial, but
cat_matvec does not work on 12-piece transformations.
Daniel described how whereami could do such a thing,
but that would require you do define the ACPC dataset
spaces in a NIML text file (like AFNI_atlas_spaces.niml
in your abin directory).

There is also the option of using 3dfractionize/adwarp,
but the 2 resample steps makes it less precise. Maybe
there are ways to make that pretty accurate though.

I guess changing adwarp is a possibility, but that might
be more difficult.

So one main question for you is, how much work would
it be to shift to orig or tlrc spaces?

- rick
Subject Author Posted

adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 05, 2014 08:19PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 05, 2014 09:37PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 08, 2014 12:12PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 08, 2014 01:53PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 09, 2014 04:57PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 09, 2014 05:12PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 12, 2014 12:28PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 12, 2014 12:54PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 12, 2014 01:26PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 15, 2014 11:50AM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 17, 2014 06:19PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 17, 2014 07:45PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 17, 2014 08:57PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 18, 2014 12:52PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 18, 2014 02:53PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 18, 2014 02:55PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 18, 2014 10:32PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 19, 2014 01:50PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 19, 2014 05:24PM