AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 15, 2014 11:50AM
That would work, but it seems a bit "round-about". Consider these alternatives:

1. Align to an MNI template directly instead. There is no manual stereotaxic procedure available to go directly to MNI space, so you would only use the @auto_tlrc or the auto_warp.py script. Align each of the datasets to a selected template and then reapply the same transformation with @auto_tlrc for the affine transformation or 3dNwarpApply with the nonlinear transformation.

2. Use the electrode locations you've marked as tags. Mark the locations in each of the subjects in order with the Tagset plugin. Align all these together with 3dTagalign to a selected subject in native space, a selected subject in MNI space, an MNI template with the same tags selected. The alignment is based on the tag locations.

There are lots of ways to go between Talairach and MNI spaces. The method you show is one of several reasonable choices, but it will introduce more interpolation, and the transformation is an approximation. I think you would be better off with one of the other two choices.
Subject Author Posted

adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 05, 2014 08:19PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 05, 2014 09:37PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 08, 2014 12:12PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 08, 2014 01:53PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 09, 2014 04:57PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 09, 2014 05:12PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 12, 2014 12:28PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 12, 2014 12:54PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 12, 2014 01:26PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 15, 2014 11:50AM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 17, 2014 06:19PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 17, 2014 07:45PM

Re: adwarp moved frontal lobe ROIs to cerebellum

rick reynolds September 17, 2014 08:57PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 18, 2014 12:52PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 18, 2014 02:53PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 18, 2014 02:55PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 18, 2014 10:32PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Christine Smith September 19, 2014 01:50PM

Re: adwarp moved frontal lobe ROIs to cerebellum

Daniel Glen September 19, 2014 05:24PM