AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 16, 2014 06:10PM
Hello AFNI Experts,

I recently encountered a warning when running 3dDeconvolve for a PPI analysis. Specifically, the warning occurs when reading in the timing file for the seed and interaction regressor. There error is as follows:
"WARNING: 1D file ${subfolder}/Seeds/sub230.Seed_run_all.1D has 239 rows and 4 columns: ignoring later columns"

Does this indicate that it is omitting the last 3 out of the 4 columns when running 3dDeconvolve? Should I be concerned about the output?

Related, does this suggest I need to convert the PPI timing files back into times of stimulus onset like my original regressors are? If so, how do I do this with the "timing_tool.py" options?

Thanks!

Danny
Subject Author Posted

3dDeconvolve Warning

Danny September 16, 2014 06:10PM

Re: 3dDeconvolve Warning

gang September 17, 2014 11:07AM

Re: 3dDeconvolve Warning

Danny September 17, 2014 02:45PM

Re: 3dDeconvolve Warning

gang September 17, 2014 03:17PM

Re: 3dDeconvolve Warning

rick reynolds September 17, 2014 03:28PM

Re: 3dDeconvolve Warning

Danny September 17, 2014 03:55PM

Re: 3dDeconvolve Warning

rick reynolds September 17, 2014 04:11PM

Re: 3dDeconvolve Warning

Danny September 17, 2014 04:26PM

Re: 3dDeconvolve Warning

rick reynolds September 22, 2014 10:14AM

Re: 3dDeconvolve Warning

Danny September 22, 2014 11:09PM