AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 17, 2014 11:33PM
That output leads to some thoughts...

1. 4.5 million voxels is a lot, you are likely oversampling
the data (which should not affect FDR correction).

2. It might be helpful to include your actual commands,
even for 3dhistog.

3. Unless the data is quite high resolution, it does not
look like you provided that gray matter mask to the
3dhistog command. What was your command?

4. The fraction of voxels at high correlation values is not
so large. Maybe the correlation is not so high. Does it
actually look like you should have significance based on
the thresholded data view in afni?

5. The reason there is no correlation of 1.0 is presumably
because your seed is an ROI or radius average. Again,
your commands would help clarify the applied steps.

- rick
Subject Author Posted

Which AFNI program can do this?

v1nch September 23, 2014 04:17PM

Re: Which AFNI program can do this?

Peter Molfese September 23, 2014 06:56PM

Re: Which AFNI program can do this?

rick reynolds September 23, 2014 09:18PM

Re: Which AFNI program can do this?

v1nch September 24, 2014 09:25AM

Re: Which AFNI program can do this?

Peter Molfese September 24, 2014 12:49PM

Re: Which AFNI program can do this?

v1nch October 17, 2014 11:43AM

Re: Which AFNI program can do this?

rick reynolds October 17, 2014 12:28PM

Re: Which AFNI program can do this?

v1nch October 17, 2014 02:03PM

Re: Which AFNI program can do this?

rick reynolds October 17, 2014 02:47PM

Re: Which AFNI program can do this?

v1nch October 17, 2014 03:47PM

Re: Which AFNI program can do this?

rick reynolds October 17, 2014 11:33PM

Re: Which AFNI program can do this?

v1nch October 20, 2014 09:38AM

Re: Which AFNI program can do this?

v1nch October 22, 2014 09:29AM

Re: Which AFNI program can do this?

rick reynolds October 22, 2014 10:17AM

Re: Which AFNI program can do this?

rick reynolds October 22, 2014 04:08PM