AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 22, 2014 04:08PM
Thanks, the data makes it very clear.

The problem may stem from the fact that there were
only 21 time points used for the correlations, so the
r -> p-value conversion does not lead to the small
p-values you may be used to with 150 TR time series
data, for example.

Looking at the afni controller, it is not just the q-values
that are big, it is also the p-values. And the distribution
of these correlation values ends up being no better than
random chance, which is why the q-values do not go
much lower than 1.

Basically, set the p-value to 0.01 or 0.001, for example.
In order to get a good q-value, there must be a high
fraction of the masked volume of voxels that survive
the threshold. There aren't enough voxels surviving.

- rick
Subject Author Posted

Which AFNI program can do this?

v1nch September 23, 2014 04:17PM

Re: Which AFNI program can do this?

Peter Molfese September 23, 2014 06:56PM

Re: Which AFNI program can do this?

rick reynolds September 23, 2014 09:18PM

Re: Which AFNI program can do this?

v1nch September 24, 2014 09:25AM

Re: Which AFNI program can do this?

Peter Molfese September 24, 2014 12:49PM

Re: Which AFNI program can do this?

v1nch October 17, 2014 11:43AM

Re: Which AFNI program can do this?

rick reynolds October 17, 2014 12:28PM

Re: Which AFNI program can do this?

v1nch October 17, 2014 02:03PM

Re: Which AFNI program can do this?

rick reynolds October 17, 2014 02:47PM

Re: Which AFNI program can do this?

v1nch October 17, 2014 03:47PM

Re: Which AFNI program can do this?

rick reynolds October 17, 2014 11:33PM

Re: Which AFNI program can do this?

v1nch October 20, 2014 09:38AM

Re: Which AFNI program can do this?

v1nch October 22, 2014 09:29AM

Re: Which AFNI program can do this?

rick reynolds October 22, 2014 10:17AM

Re: Which AFNI program can do this?

rick reynolds October 22, 2014 04:08PM