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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
| October 09, 2014 06:29AM | |
Registered: 9 years ago Posts: 1 |
Hi,
I recently upgraded my Ubuntu to14.04, and now when I run
$ afni
on a commandline, I get the long list of errors below.
After upgrading, I did try re-sudo-apt-getting the list of dependencies in the:
afni_src/other_builds/OS_notes.linux_ubuntu_12_64
file, just to make sure that they were not changed by upgrading. When I rebuilt afni from source then, there were no fatal errors in the build.
I am running the latest version of AFNI:
Precompiled binary linux_ubuntu_12_64: Oct 9 2014 (Version AFNI_2011_12_21_1014)
on a 64 bit Ubuntu 14.04.
Any advice would be welcome.
Thanks,
fwarton
---------------------------------------------------------
The error message when running $ afni:
** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to H Garavan for useful feedback
Initializing: X11.
++++++++ IMAGE SAVE SETUP WARNINGS ++++++++
++ Can't find program ppmtogif AND/OR ppmquant for Save to GIF
++ Can't find program ppm2tiff OR pnmtotiff OR pamtotiff for Save to TIFF
++ Can't find program ppmtobmp for Save to BMP
++ Can't find program pnmtopng for Save to PNG
++ Some of the missing image Save programs are in
++ the netpbm software package, which is freeware.
++ Netpbm can be found at [netpbm.sourceforge.net]
++ To disable these warnings, set environment
++ variable AFNI_IMSAVE_WARNINGS to 'NO'.
+++++++++++++++++++++++++++++++++++++++++++
. Widgets.*** buffer overflow detected ***: afni terminated
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x73e0f)[0x7f66ea12be0f]
/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7f66ea1c37dc]
/lib/x86_64-linux-gnu/libc.so.6(+0x10a6a0)[0x7f66ea1c26a0]
/lib/x86_64-linux-gnu/libc.so.6(+0x109ba9)[0x7f66ea1c1ba9]
/lib/x86_64-linux-gnu/libc.so.6(_IO_default_xsputn+0xbc)[0x7f66ea13418c]
/lib/x86_64-linux-gnu/libc.so.6(_IO_vfprintf+0x1cd5)[0x7f66ea1038b5]
/lib/x86_64-linux-gnu/libc.so.6(__vsprintf_chk+0x84)[0x7f66ea1c1c34]
/lib/x86_64-linux-gnu/libc.so.6(__sprintf_chk+0x7d)[0x7f66ea1c1b8d]
afni(load_atlas_dset+0x4fa)[0x81365a]
afni(genx_load_atlas_dset+0x1d0)[0x817df0]
afni(Atlas_With_Trimming+0x643)[0x81af93]
afni(TT_retrieve_atlas_dset+0x2c)[0x81b8cc]
afni(AFNI_make_wid1+0x4ead)[0x4ce52d]
afni(AFNI_make_widgets+0xa6a)[0x4dd0ca]
afni(new_AFNI_controller+0x61b)[0x4e02db]
afni[0x4941c2]
afni(PLUG_workprocess+0x60)[0x558b10]
/usr/lib/x86_64-linux-gnu/libXt.so.6(+0x2be10)[0x7f66eb12be10]
/usr/lib/x86_64-linux-gnu/libXt.so.6(XtAppProcessEvent+0x2f1)[0x7f66eb12d9d1]
/usr/lib/x86_64-linux-gnu/libXt.so.6(XtAppMainLoop+0x2d)[0x7f66eb12289d]
afni(main+0x8d2)[0x452cb2]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x7f66ea0d9ec5]
afni[0x4540d0]
======= Memory map: ========
00400000-00c68000 r-xp 00000000 08:07 2495830 /home/fleur/afni_src/linux_ubuntu_12_64/afni
00e68000-00e80000 r--p 00868000 08:07 2495830 /home/fleur/afni_src/linux_ubuntu_12_64/afni
00e80000-00f48000 rw-p 00880000 08:07 2495830 /home/fleur/afni_src/linux_ubuntu_12_64/afni
00f48000-010d7000 rw-p 00000000 00:00 0
01700000-01731000 rw-p 00000000 00:00 0 [heap]
01731000-01c72000 rw-p 00000000 00:00 0 [heap]
7f66e7c90000-7f66e7ca6000 r-xp 00000000 08:06 918336 /lib/x86_64-linux-gnu/libgcc_s.so.1
7f66e7ca6000-7f66e7ea5000 ---p 00016000 08:06 918336 /lib/x86_64-linux-gnu/libgcc_s.so.1
7f66e7ea5000-7f66e7ea6000 rw-p 00015000 08:06 918336 /lib/x86_64-linux-gnu/libgcc_s.so.1
7f66e7ea6000-7f66e7eab000 r-xp 00000000 08:06 544712 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7f66e7eab000-7f66e80aa000 ---p 00005000 08:06 544712 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7f66e80aa000-7f66e80ab000 r--p 00004000 08:06 544712 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7f66e80ab000-7f66e80ac000 rw-p 00005000 08:06 544712 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7f66e80ac000-7f66e80b5000 r-xp 00000000 08:06 535062 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7f66e80b5000-7f66e82b4000 ---p 00009000 08:06 535062 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7f66e82b4000-7f66e82b5000 r--p 00008000 08:06 535062 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7f66e82b5000-7f66e82b6000 rw-p 00009000 08:06 535062 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7f66e82b6000-7f66e82bb000 r-xp 00000000 08:06 534548 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f66e82bb000-7f66e84ba000 ---p 00005000 08:06 534548 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f66e84ba000-7f66e84bb000 r--p 00004000 08:06 534548 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f66e84bb000-7f66e84bc000 rw-p 00005000 08:06 534548 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f66e84bc000-7f66e84be000 r-xp 00000000 08:06 535244 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f66e84be000-7f66e86be000 ---p 00002000 08:06 535244 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f66e86be000-7f66e86bf000 r--p 00002000 08:06 535244 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f66e86bf000-7f66e86c0000 rw-p 00003000 08:06 535244 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f66e86c0000-7f66e86c4000 r-xp 00000000 08:06 918789 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f66e86c4000-7f66e88c3000 ---p 00004000 08:06 918789 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f66e88c3000-7f66e88c4000 r--p 00003000 08:06 918789 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f66e88c4000-7f66e88c5000 rw-p 00004000 08:06 918789 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f66e88c5000-7f66e88ce000 r-xp 00000000 08:06 535272 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7f66e88ce000-7f66e8acd000 ---p 00009000 08:06 535272 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7f66e8acd000-7f66e8ace000 r--p 00008000 08:06 535272 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7f66e8ace000-7f66e8acf000 rw-p 00009000 08:06 535272 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7f66e8acf000-7f66e8ae8000 r-xp 00000000 08:06 918787 /lib/x86_64-linux-gnu/libpthread-2.19.so
7f66e8ae8000-7f66e8ce7000 ---p 00019000 08:06 918787 /lib/x86_64-linux-gnu/libpthread-2.19.so
7f66e8ce7000-7f66e8ce8000 r--p 00018000 08:06 918787 /lib/x86_64-linux-gnu/libpthread-2.19.so
7f66e8ce8000-7f66e8ce9000 rw-p 00019000 08:06 918787 /lib/x86_64-linux-gnu/libpthread-2.19.so
7f66e8ce9000-7f66e8ced000 rw-p 00000000 00:00 0
7f66e8ced000-7f66e8d8a000 r-xp 00000000 08:06 526953 /usr/lib/x86_64-linux-gnu/libfreetype.so.6.11.1
7f66e8d8a000-7f66e8f89000 ---p 0009d000 08:06 526953 /usr/lib/x86_64-linux-gnu/libfreetype.so.6.11.1
7f66e8f89000-7f66e8f8f000 r--p 0009c000 08:06 526953 /usr/lib/x86_64-linux-gnu/libfreetype.so.6.11.1
7f66e8f8f000-7f66e8f90000 rw-p 000a2000 08:06 526953 /usr/lib/x86_64-linux-gnu/libfreetype.so.6.11.1
7f66e8f90000-7f66e8fad000 r-xp 00000000 08:06 525625 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f66e8fad000-7f66e91ad000 ---p 0001d000 08:06 525625 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f66e91ad000-7f66e91ae000 r--p 0001d000 08:06 525625 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f66e91ae000-7f66e91af000 rw-p 0001e000 08:06 525625 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f66e91af000-7f66e91c6000 r-xp 00000000 08:06 534472 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f66e91c6000-7f66e93c5000 ---p 00017000 08:06 534472 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f66e93c5000-7f66e93c6000 r--p 00016000 08:06 534472 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f66e93c6000-7f66e93c7000 rw-p 00017000 08:06 534472 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f66e93c7000-7f66e93cb000 rw-p 00000000 00:00 0
7f66e93cb000-7f66e93d2000 r-xp 00000000 08:06 534529 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f66e93d2000-7f66e95d1000 ---p 00007000 08:06 534529 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f66e95d1000-7f66e95d2000 r--p 00006000 08:06 534529 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f66e95d2000-7f66e95d3000 rw-p 00007000 08:06 534529 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f66e95d3000-7f66e95f8000 r-xp 00000000 08:06 917598 /lib/x86_64-linux-gnu/libpng12.so.0.50.0
7f66e95f8000-7f66e97f7000 ---p 00025000 08:06 917598 /lib/x86_64-linux-gnu/libpng12.so.0.50.0
7f66e97f7000-7f66e97f8000 r--p 00024000 08:06 917598 /lib/x86_64-linux-gnu/libpng12.so.0.50.0
7f66e97f8000-7f66e97f9000 rw-p 00025000 08:06 917598 /lib/x86_64-linux-gnu/libpng12.so.0.50.0
7f66e97f9000-7f66e983c000 r-xp 00000000 08:06 538784 /usr/lib/x86_64-linux-gnu/libjpeg.so.8.0.2
7f66e983c000-7f66e9a3c000 ---p 00043000 08:06 538784 /usr/lib/x86_64-linux-gnu/libjpeg.so.8.0.2
7f66e9a3c000-7f66e9a3d000 r--p 00043000 08:06 538784 /usr/lib/x86_64-linux-gnu/libjpeg.so.8.0.2
7f66e9a3d000-7f66e9a3e000 rw-p 00044000 08:06 538784 /usr/lib/x86_64-linux-gnu/libjpeg.so.8.0.2
7f66e9a3e000-7f66e9a4e000 rw-p 00000000 00:00 0
7f66e9a4e000-7f66e9a62000 r-xp 00000000 08:06 527435 /usr/lib/x86_64-linux-gnu/libXft.so.2.3.1
7f66e9a62000-7f66e9c61000 ---p 00014000 08:06 527435 /usr/lib/x86_64-linux-gnu/libXft.so.2.3.1
7f66e9c61000-7f66e9c62000 r--p 00013000 08:06 527435 /usr/lib/x86_64-linux-gnu/libXft.so.2.3.1
7f66e9c62000-7f66e9c63000 rw-p 00014000 08:06 527435 /usr/lib/x86_64-linux-gnu/libXft.so.2.3.1
7f66e9c63000-7f66e9c9d000 r-xp 00000000 08:06 525298 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.8.0
7f66e9c9d000-7f66e9e9c000 ---p 0003a000 08:06 525298 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.8.0
7f66e9e9c000-7f66e9e9e000 r--p 00039000 08:06 525298 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.8.0
7f66e9e9e000-7f66e9e9f000 rw-p 0003b000 08:06 525298 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.8.0
7f66e9e9f000-7f66e9eb7000 r-xp 00000000 08:06 534560 /usr/lib/x86_64-linux-gnu/libXmu.so.6.2.0
7f66e9eb7000-7f66ea0b6000 ---p 00018000 08:06 534560 /usr/lib/x86_64-linux-gnu/libXmu.so.6.2.0
7f66ea0b6000-7f66ea0b7000 r--p 00017000 08:06 534560 /usr/lib/x86_64-linux-gnu/libXmu.so.6.2.0
7f66ea0b7000-7f66ea0b8000 rw-p 00018000 08:06 534560 /usr/lib/x86_64-linux-gnu/libXmu.so.6.2.0
7f66ea0b8000-7f66ea273000 r-xp 00000000 08:06 918763 /lib/x86_64-linux-gnu/libc-2.19.so
7f66ea273000-7f66ea473000 ---p 001bb000 08:06 918763 /lib/x86_64-linux-gnu/libc-2.19.so
7f66ea473000-7f66ea477000 r--p 001bb000 08:06 918763 /lib/x86_64-linux-gnu/libc-2.19.so
7f66ea477000-7f66ea479000 rw-p 001bf000 08:06 918763 /lib/x86_64-linux-gnu/libc-2.19.so
7f66ea479000-7f66ea47e000 rw-p 00000000 00:00 0
7f66ea47e000-7f66ea481000 r-xp 00000000 08:06 918786 /lib/x86_64-linux-gnu/libdl-2.19.so
7f66ea481000-7f66ea680000 ---p 00003000 08:06 918786 /lib/x86_64-linux-gnu/libdl-2.19.so
7f66ea680000-7f66ea681000 r--p 00002000 08:06 918786 /lib/x86_64-linux-gnu/libdl-2.19.so
7f66ea681000-7f66ea682000 rw-p 00003000 08:06 918786 /lib/x86_64-linux-gnu/libdl-2.19.so
7f66ea682000-7f66ea787000 r-xp 00000000 08:06 918769 /lib/x86_64-linux-gnu/libm-2.19.so
7f66ea787000-7f66ea986000 ---p 00105000 08:06 918769 /lib/x86_64-linux-gnu/libm-2.19.so
7f66ea986000-7f66ea987000 r--p 00104000 08:06 918769 /lib/x86_64-linux-gnu/libm-2.19.so
7f66ea987000-7f66ea988000 rw-p 00105000 08:06 918769 /lib/x86_64-linux-gnu/libm-2.19.so
7f66ea988000-7f66ea9af000 r-xp 00000000 08:06 920239 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f66ea9af000-7f66eabaf000 ---p 00027000 08:06 920239 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f66eabaf000-7f66eabb1000 r--p 00027000 08:06 920239 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f66eabb1000-7f66eabb2000 rw-p 00029000 08:06 920239 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f66eabb2000-7f66eabca000 r-xp 00000000 08:06 920264 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f66eabca000-7f66eadc9000 ---p 00018000 08:06 920264 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f66eadc9000-7f66eadca000 r--p 00017000 08:06 920264 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f66eadca000-7f66eadcb000 rw-p 00018000 08:06 920264 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f66eadcb000-7f66eaefb000 r-xp 00000000 08:06 538167 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f66eaefb000-7f66eb0fb000 ---p 00130000 08:06 538167 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f66eb0fb000-7f66eb0fc000 r--p 00130000 08:06 538167 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f66eb0fc000-7f66eb100000 rw-p 00131000 08:06 538167 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f66eb100000-7f66eb15f000 r-xp 00000000 08:06 538260 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f66eb15f000-7f66eb35f000 ---p 0005f000 08:06 538260 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f66eb35f000-7f66eb360000 r--p 0005f000 08:06 538260 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f66eb360000-7f66eb365000 rw-p 00060000 08:06 538260 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f66eb365000-7f66eb366000 rw-p 00000000 00:00 0
7f66eb366000-7f66eb377000 r-xp 00000000 08:06 533979 /usr/lib/x86_64-linux-gnu/libXext.so.6.4.0
7f66eb377000-7f66eb576000 ---p 00011000 08:06 533979 /usr/lib/x86_64-linux-gnu/libXext.so.6.4.0
7f66eb576000-7f66eb577000 r--p 00010000 08:06 533979 /usr/lib/x86_64-linux-gnu/libXext.so.6.4.0
7f66eb577000-7f66eb578000 rw-p 00011000 08:06 533979 /usr/lib/x86_64-linux-gnu/libXext.so.6.4.0
7f66eb578000-7f66eb589000 r-xp 00000000 08:06 534566 /usr/lib/x86_64-linux-gnu/libXpm.so.4.11.0
7f66eb589000-7f66eb788000 ---p 00011000 08:06 534566 /usr/lib/x86_64-linux-gnu/libXpm.so.4.11.0
7f66eb788000-7f66eb789000 r--p 00010000 08:06 534566 /usr/lib/x86_64-linux-gnu/libXpm.so.4.11.0
7f66eb789000-7f66eb78a000 rw-p 00011000 08:06 534566 /usr/lib/x86_64-linux-gnu/libXpm.so.4.11.0
7f66eb78a000-7f66eba18000 r-xp 00000000 08:06 533214 /usr/lib/x86_64-linux-gnu/libXm.so.4.0.4
7f66eba18000-7f66ebc17000 ---p 0028e000 08:06 533214 /usr/lib/x86_64-linux-gnu/libXm.so.4.0.4
7f66ebc17000-7f66ebc1b000 r--p 0028d000 08:06 533214 /usr/lib/x86_64-linux-gnu/libXm.so.4.0.4
7f66ebc1b000-7f66ebc3f000 rw-p 00291000 08:06 533214 /usr/lib/x86_64-linux-gnu/libXm.so.4.0.4
7f66ebc3f000-7f66ebc40000 rw-p 00000000 00:00 0
7f66ebc40000-7f66ebc63000 r-xp 00000000 08:06 918765 /lib/x86_64-linux-gnu/ld-2.19.so
7f66ebdc9000-7f66ebe35000 rw-p 00000000 00:00 0
7f66ebe35000-7f66ebe41000 rw-p 00000000 00:00 0
7f66ebe5e000-7f66ebe60000 rw-p 00000000 00:00 0
7f66ebe60000-7f66ebe62000 rw-p 00000000 00:00 0
7f66ebe62000-7f66ebe63000 r--p 00022000 08:06 918765 /lib/x86_64-linux-gnu/ld-2.19.so
7f66ebe63000-7f66ebe64000 rw-p 00023000 08:06 918765 /lib/x86_64-linux-gnu/ld-2.19.so
7f66ebe64000-7f66ebe65000 rw-p 00000000 00:00 0
7fffa674b000-7fffa676d000 rw-p 00000000 00:00 0 [stack]
7fffa67fe000-7fffa6800000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
++ AFNI is detached from terminal.
I recently upgraded my Ubuntu to14.04, and now when I run
$ afni
on a commandline, I get the long list of errors below.
After upgrading, I did try re-sudo-apt-getting the list of dependencies in the:
afni_src/other_builds/OS_notes.linux_ubuntu_12_64
file, just to make sure that they were not changed by upgrading. When I rebuilt afni from source then, there were no fatal errors in the build.
I am running the latest version of AFNI:
Precompiled binary linux_ubuntu_12_64: Oct 9 2014 (Version AFNI_2011_12_21_1014)
on a 64 bit Ubuntu 14.04.
Any advice would be welcome.
Thanks,
fwarton
---------------------------------------------------------
The error message when running $ afni:
** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to H Garavan for useful feedback
Initializing: X11.
++++++++ IMAGE SAVE SETUP WARNINGS ++++++++
++ Can't find program ppmtogif AND/OR ppmquant for Save to GIF
++ Can't find program ppm2tiff OR pnmtotiff OR pamtotiff for Save to TIFF
++ Can't find program ppmtobmp for Save to BMP
++ Can't find program pnmtopng for Save to PNG
++ Some of the missing image Save programs are in
++ the netpbm software package, which is freeware.
++ Netpbm can be found at [netpbm.sourceforge.net]
++ To disable these warnings, set environment
++ variable AFNI_IMSAVE_WARNINGS to 'NO'.
+++++++++++++++++++++++++++++++++++++++++++
. Widgets.*** buffer overflow detected ***: afni terminated
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x73e0f)[0x7f66ea12be0f]
/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7f66ea1c37dc]
/lib/x86_64-linux-gnu/libc.so.6(+0x10a6a0)[0x7f66ea1c26a0]
/lib/x86_64-linux-gnu/libc.so.6(+0x109ba9)[0x7f66ea1c1ba9]
/lib/x86_64-linux-gnu/libc.so.6(_IO_default_xsputn+0xbc)[0x7f66ea13418c]
/lib/x86_64-linux-gnu/libc.so.6(_IO_vfprintf+0x1cd5)[0x7f66ea1038b5]
/lib/x86_64-linux-gnu/libc.so.6(__vsprintf_chk+0x84)[0x7f66ea1c1c34]
/lib/x86_64-linux-gnu/libc.so.6(__sprintf_chk+0x7d)[0x7f66ea1c1b8d]
afni(load_atlas_dset+0x4fa)[0x81365a]
afni(genx_load_atlas_dset+0x1d0)[0x817df0]
afni(Atlas_With_Trimming+0x643)[0x81af93]
afni(TT_retrieve_atlas_dset+0x2c)[0x81b8cc]
afni(AFNI_make_wid1+0x4ead)[0x4ce52d]
afni(AFNI_make_widgets+0xa6a)[0x4dd0ca]
afni(new_AFNI_controller+0x61b)[0x4e02db]
afni[0x4941c2]
afni(PLUG_workprocess+0x60)[0x558b10]
/usr/lib/x86_64-linux-gnu/libXt.so.6(+0x2be10)[0x7f66eb12be10]
/usr/lib/x86_64-linux-gnu/libXt.so.6(XtAppProcessEvent+0x2f1)[0x7f66eb12d9d1]
/usr/lib/x86_64-linux-gnu/libXt.so.6(XtAppMainLoop+0x2d)[0x7f66eb12289d]
afni(main+0x8d2)[0x452cb2]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x7f66ea0d9ec5]
afni[0x4540d0]
======= Memory map: ========
00400000-00c68000 r-xp 00000000 08:07 2495830 /home/fleur/afni_src/linux_ubuntu_12_64/afni
00e68000-00e80000 r--p 00868000 08:07 2495830 /home/fleur/afni_src/linux_ubuntu_12_64/afni
00e80000-00f48000 rw-p 00880000 08:07 2495830 /home/fleur/afni_src/linux_ubuntu_12_64/afni
00f48000-010d7000 rw-p 00000000 00:00 0
01700000-01731000 rw-p 00000000 00:00 0 [heap]
01731000-01c72000 rw-p 00000000 00:00 0 [heap]
7f66e7c90000-7f66e7ca6000 r-xp 00000000 08:06 918336 /lib/x86_64-linux-gnu/libgcc_s.so.1
7f66e7ca6000-7f66e7ea5000 ---p 00016000 08:06 918336 /lib/x86_64-linux-gnu/libgcc_s.so.1
7f66e7ea5000-7f66e7ea6000 rw-p 00015000 08:06 918336 /lib/x86_64-linux-gnu/libgcc_s.so.1
7f66e7ea6000-7f66e7eab000 r-xp 00000000 08:06 544712 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7f66e7eab000-7f66e80aa000 ---p 00005000 08:06 544712 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7f66e80aa000-7f66e80ab000 r--p 00004000 08:06 544712 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7f66e80ab000-7f66e80ac000 rw-p 00005000 08:06 544712 /usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7f66e80ac000-7f66e80b5000 r-xp 00000000 08:06 535062 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7f66e80b5000-7f66e82b4000 ---p 00009000 08:06 535062 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7f66e82b4000-7f66e82b5000 r--p 00008000 08:06 535062 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7f66e82b5000-7f66e82b6000 rw-p 00009000 08:06 535062 /usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7f66e82b6000-7f66e82bb000 r-xp 00000000 08:06 534548 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f66e82bb000-7f66e84ba000 ---p 00005000 08:06 534548 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f66e84ba000-7f66e84bb000 r--p 00004000 08:06 534548 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f66e84bb000-7f66e84bc000 rw-p 00005000 08:06 534548 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f66e84bc000-7f66e84be000 r-xp 00000000 08:06 535244 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f66e84be000-7f66e86be000 ---p 00002000 08:06 535244 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f66e86be000-7f66e86bf000 r--p 00002000 08:06 535244 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f66e86bf000-7f66e86c0000 rw-p 00003000 08:06 535244 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f66e86c0000-7f66e86c4000 r-xp 00000000 08:06 918789 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f66e86c4000-7f66e88c3000 ---p 00004000 08:06 918789 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f66e88c3000-7f66e88c4000 r--p 00003000 08:06 918789 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f66e88c4000-7f66e88c5000 rw-p 00004000 08:06 918789 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f66e88c5000-7f66e88ce000 r-xp 00000000 08:06 535272 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7f66e88ce000-7f66e8acd000 ---p 00009000 08:06 535272 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7f66e8acd000-7f66e8ace000 r--p 00008000 08:06 535272 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7f66e8ace000-7f66e8acf000 rw-p 00009000 08:06 535272 /usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7f66e8acf000-7f66e8ae8000 r-xp 00000000 08:06 918787 /lib/x86_64-linux-gnu/libpthread-2.19.so
7f66e8ae8000-7f66e8ce7000 ---p 00019000 08:06 918787 /lib/x86_64-linux-gnu/libpthread-2.19.so
7f66e8ce7000-7f66e8ce8000 r--p 00018000 08:06 918787 /lib/x86_64-linux-gnu/libpthread-2.19.so
7f66e8ce8000-7f66e8ce9000 rw-p 00019000 08:06 918787 /lib/x86_64-linux-gnu/libpthread-2.19.so
7f66e8ce9000-7f66e8ced000 rw-p 00000000 00:00 0
7f66e8ced000-7f66e8d8a000 r-xp 00000000 08:06 526953 /usr/lib/x86_64-linux-gnu/libfreetype.so.6.11.1
7f66e8d8a000-7f66e8f89000 ---p 0009d000 08:06 526953 /usr/lib/x86_64-linux-gnu/libfreetype.so.6.11.1
7f66e8f89000-7f66e8f8f000 r--p 0009c000 08:06 526953 /usr/lib/x86_64-linux-gnu/libfreetype.so.6.11.1
7f66e8f8f000-7f66e8f90000 rw-p 000a2000 08:06 526953 /usr/lib/x86_64-linux-gnu/libfreetype.so.6.11.1
7f66e8f90000-7f66e8fad000 r-xp 00000000 08:06 525625 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f66e8fad000-7f66e91ad000 ---p 0001d000 08:06 525625 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f66e91ad000-7f66e91ae000 r--p 0001d000 08:06 525625 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f66e91ae000-7f66e91af000 rw-p 0001e000 08:06 525625 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f66e91af000-7f66e91c6000 r-xp 00000000 08:06 534472 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f66e91c6000-7f66e93c5000 ---p 00017000 08:06 534472 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f66e93c5000-7f66e93c6000 r--p 00016000 08:06 534472 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f66e93c6000-7f66e93c7000 rw-p 00017000 08:06 534472 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f66e93c7000-7f66e93cb000 rw-p 00000000 00:00 0
7f66e93cb000-7f66e93d2000 r-xp 00000000 08:06 534529 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f66e93d2000-7f66e95d1000 ---p 00007000 08:06 534529 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f66e95d1000-7f66e95d2000 r--p 00006000 08:06 534529 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f66e95d2000-7f66e95d3000 rw-p 00007000 08:06 534529 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f66e95d3000-7f66e95f8000 r-xp 00000000 08:06 917598 /lib/x86_64-linux-gnu/libpng12.so.0.50.0
7f66e95f8000-7f66e97f7000 ---p 00025000 08:06 917598 /lib/x86_64-linux-gnu/libpng12.so.0.50.0
7f66e97f7000-7f66e97f8000 r--p 00024000 08:06 917598 /lib/x86_64-linux-gnu/libpng12.so.0.50.0
7f66e97f8000-7f66e97f9000 rw-p 00025000 08:06 917598 /lib/x86_64-linux-gnu/libpng12.so.0.50.0
7f66e97f9000-7f66e983c000 r-xp 00000000 08:06 538784 /usr/lib/x86_64-linux-gnu/libjpeg.so.8.0.2
7f66e983c000-7f66e9a3c000 ---p 00043000 08:06 538784 /usr/lib/x86_64-linux-gnu/libjpeg.so.8.0.2
7f66e9a3c000-7f66e9a3d000 r--p 00043000 08:06 538784 /usr/lib/x86_64-linux-gnu/libjpeg.so.8.0.2
7f66e9a3d000-7f66e9a3e000 rw-p 00044000 08:06 538784 /usr/lib/x86_64-linux-gnu/libjpeg.so.8.0.2
7f66e9a3e000-7f66e9a4e000 rw-p 00000000 00:00 0
7f66e9a4e000-7f66e9a62000 r-xp 00000000 08:06 527435 /usr/lib/x86_64-linux-gnu/libXft.so.2.3.1
7f66e9a62000-7f66e9c61000 ---p 00014000 08:06 527435 /usr/lib/x86_64-linux-gnu/libXft.so.2.3.1
7f66e9c61000-7f66e9c62000 r--p 00013000 08:06 527435 /usr/lib/x86_64-linux-gnu/libXft.so.2.3.1
7f66e9c62000-7f66e9c63000 rw-p 00014000 08:06 527435 /usr/lib/x86_64-linux-gnu/libXft.so.2.3.1
7f66e9c63000-7f66e9c9d000 r-xp 00000000 08:06 525298 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.8.0
7f66e9c9d000-7f66e9e9c000 ---p 0003a000 08:06 525298 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.8.0
7f66e9e9c000-7f66e9e9e000 r--p 00039000 08:06 525298 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.8.0
7f66e9e9e000-7f66e9e9f000 rw-p 0003b000 08:06 525298 /usr/lib/x86_64-linux-gnu/libfontconfig.so.1.8.0
7f66e9e9f000-7f66e9eb7000 r-xp 00000000 08:06 534560 /usr/lib/x86_64-linux-gnu/libXmu.so.6.2.0
7f66e9eb7000-7f66ea0b6000 ---p 00018000 08:06 534560 /usr/lib/x86_64-linux-gnu/libXmu.so.6.2.0
7f66ea0b6000-7f66ea0b7000 r--p 00017000 08:06 534560 /usr/lib/x86_64-linux-gnu/libXmu.so.6.2.0
7f66ea0b7000-7f66ea0b8000 rw-p 00018000 08:06 534560 /usr/lib/x86_64-linux-gnu/libXmu.so.6.2.0
7f66ea0b8000-7f66ea273000 r-xp 00000000 08:06 918763 /lib/x86_64-linux-gnu/libc-2.19.so
7f66ea273000-7f66ea473000 ---p 001bb000 08:06 918763 /lib/x86_64-linux-gnu/libc-2.19.so
7f66ea473000-7f66ea477000 r--p 001bb000 08:06 918763 /lib/x86_64-linux-gnu/libc-2.19.so
7f66ea477000-7f66ea479000 rw-p 001bf000 08:06 918763 /lib/x86_64-linux-gnu/libc-2.19.so
7f66ea479000-7f66ea47e000 rw-p 00000000 00:00 0
7f66ea47e000-7f66ea481000 r-xp 00000000 08:06 918786 /lib/x86_64-linux-gnu/libdl-2.19.so
7f66ea481000-7f66ea680000 ---p 00003000 08:06 918786 /lib/x86_64-linux-gnu/libdl-2.19.so
7f66ea680000-7f66ea681000 r--p 00002000 08:06 918786 /lib/x86_64-linux-gnu/libdl-2.19.so
7f66ea681000-7f66ea682000 rw-p 00003000 08:06 918786 /lib/x86_64-linux-gnu/libdl-2.19.so
7f66ea682000-7f66ea787000 r-xp 00000000 08:06 918769 /lib/x86_64-linux-gnu/libm-2.19.so
7f66ea787000-7f66ea986000 ---p 00105000 08:06 918769 /lib/x86_64-linux-gnu/libm-2.19.so
7f66ea986000-7f66ea987000 r--p 00104000 08:06 918769 /lib/x86_64-linux-gnu/libm-2.19.so
7f66ea987000-7f66ea988000 rw-p 00105000 08:06 918769 /lib/x86_64-linux-gnu/libm-2.19.so
7f66ea988000-7f66ea9af000 r-xp 00000000 08:06 920239 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f66ea9af000-7f66eabaf000 ---p 00027000 08:06 920239 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f66eabaf000-7f66eabb1000 r--p 00027000 08:06 920239 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f66eabb1000-7f66eabb2000 rw-p 00029000 08:06 920239 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f66eabb2000-7f66eabca000 r-xp 00000000 08:06 920264 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f66eabca000-7f66eadc9000 ---p 00018000 08:06 920264 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f66eadc9000-7f66eadca000 r--p 00017000 08:06 920264 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f66eadca000-7f66eadcb000 rw-p 00018000 08:06 920264 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f66eadcb000-7f66eaefb000 r-xp 00000000 08:06 538167 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f66eaefb000-7f66eb0fb000 ---p 00130000 08:06 538167 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f66eb0fb000-7f66eb0fc000 r--p 00130000 08:06 538167 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f66eb0fc000-7f66eb100000 rw-p 00131000 08:06 538167 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f66eb100000-7f66eb15f000 r-xp 00000000 08:06 538260 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f66eb15f000-7f66eb35f000 ---p 0005f000 08:06 538260 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f66eb35f000-7f66eb360000 r--p 0005f000 08:06 538260 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f66eb360000-7f66eb365000 rw-p 00060000 08:06 538260 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f66eb365000-7f66eb366000 rw-p 00000000 00:00 0
7f66eb366000-7f66eb377000 r-xp 00000000 08:06 533979 /usr/lib/x86_64-linux-gnu/libXext.so.6.4.0
7f66eb377000-7f66eb576000 ---p 00011000 08:06 533979 /usr/lib/x86_64-linux-gnu/libXext.so.6.4.0
7f66eb576000-7f66eb577000 r--p 00010000 08:06 533979 /usr/lib/x86_64-linux-gnu/libXext.so.6.4.0
7f66eb577000-7f66eb578000 rw-p 00011000 08:06 533979 /usr/lib/x86_64-linux-gnu/libXext.so.6.4.0
7f66eb578000-7f66eb589000 r-xp 00000000 08:06 534566 /usr/lib/x86_64-linux-gnu/libXpm.so.4.11.0
7f66eb589000-7f66eb788000 ---p 00011000 08:06 534566 /usr/lib/x86_64-linux-gnu/libXpm.so.4.11.0
7f66eb788000-7f66eb789000 r--p 00010000 08:06 534566 /usr/lib/x86_64-linux-gnu/libXpm.so.4.11.0
7f66eb789000-7f66eb78a000 rw-p 00011000 08:06 534566 /usr/lib/x86_64-linux-gnu/libXpm.so.4.11.0
7f66eb78a000-7f66eba18000 r-xp 00000000 08:06 533214 /usr/lib/x86_64-linux-gnu/libXm.so.4.0.4
7f66eba18000-7f66ebc17000 ---p 0028e000 08:06 533214 /usr/lib/x86_64-linux-gnu/libXm.so.4.0.4
7f66ebc17000-7f66ebc1b000 r--p 0028d000 08:06 533214 /usr/lib/x86_64-linux-gnu/libXm.so.4.0.4
7f66ebc1b000-7f66ebc3f000 rw-p 00291000 08:06 533214 /usr/lib/x86_64-linux-gnu/libXm.so.4.0.4
7f66ebc3f000-7f66ebc40000 rw-p 00000000 00:00 0
7f66ebc40000-7f66ebc63000 r-xp 00000000 08:06 918765 /lib/x86_64-linux-gnu/ld-2.19.so
7f66ebdc9000-7f66ebe35000 rw-p 00000000 00:00 0
7f66ebe35000-7f66ebe41000 rw-p 00000000 00:00 0
7f66ebe5e000-7f66ebe60000 rw-p 00000000 00:00 0
7f66ebe60000-7f66ebe62000 rw-p 00000000 00:00 0
7f66ebe62000-7f66ebe63000 r--p 00022000 08:06 918765 /lib/x86_64-linux-gnu/ld-2.19.so
7f66ebe63000-7f66ebe64000 rw-p 00023000 08:06 918765 /lib/x86_64-linux-gnu/ld-2.19.so
7f66ebe64000-7f66ebe65000 rw-p 00000000 00:00 0
7fffa674b000-7fffa676d000 rw-p 00000000 00:00 0 [stack]
7fffa67fe000-7fffa6800000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
++ AFNI is detached from terminal.
| Subject | Author | Posted |
|---|---|---|
|
fwarton | October 09, 2014 06:29AM |
|
rick reynolds | October 14, 2014 03:04PM |
