oh great about fat_roi_row.py
how does one attach a labeltable to a 3d file? i don't think it's in there. if i 3dinfo the mask 3d file i get:
$ 3dinfo mask_aseg_nl_1.4+tlrc.HEAD
++ 3dinfo: AFNI version=AFNI_2011_12_21_1014 (Oct 17 2014) [64-bit]
Dataset File: mask_aseg_nl_1.4+tlrc
Identifier Code: AFN_8A3MdjhCuFPJj3azOTx47A Creation Date: Fri Oct 3 04:46:31 2014
Template Space: MNI
Dataset Type: Anat Bucket (-abuc)
Byte Order: LSB_FIRST [this CPU native = LSB_FIRST]
Storage Mode: BRIK
Storage Space: 12,549,600 (13 million [mega]) bytes
Geometry String: "MATRIX(-1.4,0,0,97.05,0,-1.4,0,133.25,0,0,1.4,-71.55):140,166,135"
Data Axes Tilt: Plumb
Data Axes Orientation:
first (x) = Left-to-Right
second (y) = Posterior-to-Anterior
third (z) = Inferior-to-Superior [-orient LPI]
R-to-L extent: -97.550 [R] -to- 97.050 [L] -step- 1.400 mm [140 voxels]
A-to-P extent: -97.750 [A] -to- 133.250 [P] -step- 1.400 mm [166 voxels]
I-to-S extent: -71.550
-to- 116.050 [S] -step- 1.400 mm [135 voxels]
Number of values stored at each pixel = 1
-- At sub-brick #0 '#0' datum type is float: 0 to 12175
----- HISTORY -----
[torrisisj@p69: Thu Oct 2 16:19:24 2014] 3dcopy subj002/aparc.a2009s+aseg.nii 002.results/aparc.a2009s+aseg.nii
[torrisisj@p69: Fri Oct 3 04:47:19 2014] 3dNwarpApply -master anat_unif_ns+tlrc -dxyz 1.4 -source aparc.a2009s+aseg.nii -nwarp anat.aff.qw_WARP.nii -affter anat.aff.Xat.1D -prefix mask_aseg_nl_1.4 -ainterp NN
So i was just adding aparc.a2009s+aseg_rank.niml.lt to the same folder, trying to add it after the -in_rois flag, changing the name to match "mask_aseg_nl_1.4+tlrc" in case 3dNetCorr might automatically recognize it if it's in the same directory, etc
afni -ver yields:
"Precompiled binary linux_openmp_64: Oct 17 2014 (Version AFNI_2011_12_21_1014)"