AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 21, 2014 04:02PM
oh great about fat_roi_row.py

how does one attach a labeltable to a 3d file? i don't think it's in there. if i 3dinfo the mask 3d file i get:

$ 3dinfo mask_aseg_nl_1.4+tlrc.HEAD

++ 3dinfo: AFNI version=AFNI_2011_12_21_1014 (Oct 17 2014) [64-bit]
Dataset File: mask_aseg_nl_1.4+tlrc
Identifier Code: AFN_8A3MdjhCuFPJj3azOTx47A Creation Date: Fri Oct 3 04:46:31 2014
Template Space: MNI
Dataset Type: Anat Bucket (-abuc)
Byte Order: LSB_FIRST [this CPU native = LSB_FIRST]
Storage Mode: BRIK
Storage Space: 12,549,600 (13 million [mega]) bytes
Geometry String: "MATRIX(-1.4,0,0,97.05,0,-1.4,0,133.25,0,0,1.4,-71.55):140,166,135"
Data Axes Tilt: Plumb
Data Axes Orientation:
first (x) = Left-to-Right
second (y) = Posterior-to-Anterior
third (z) = Inferior-to-Superior [-orient LPI]
R-to-L extent: -97.550 [R] -to- 97.050 [L] -step- 1.400 mm [140 voxels]
A-to-P extent: -97.750 [A] -to- 133.250 [P] -step- 1.400 mm [166 voxels]
I-to-S extent: -71.550 -to- 116.050 [S] -step- 1.400 mm [135 voxels]
Number of values stored at each pixel = 1
-- At sub-brick #0 '#0' datum type is float: 0 to 12175
----- HISTORY -----
[torrisisj@p69: Thu Oct 2 16:19:24 2014] 3dcopy subj002/aparc.a2009s+aseg.nii 002.results/aparc.a2009s+aseg.nii
[torrisisj@p69: Fri Oct 3 04:47:19 2014] 3dNwarpApply -master anat_unif_ns+tlrc -dxyz 1.4 -source aparc.a2009s+aseg.nii -nwarp anat.aff.qw_WARP.nii -affter anat.aff.Xat.1D -prefix mask_aseg_nl_1.4 -ainterp NN

So i was just adding aparc.a2009s+aseg_rank.niml.lt to the same folder, trying to add it after the -in_rois flag, changing the name to match "mask_aseg_nl_1.4+tlrc" in case 3dNetCorr might automatically recognize it if it's in the same directory, etc

afni -ver yields:
"Precompiled binary linux_openmp_64: Oct 17 2014 (Version AFNI_2011_12_21_1014)"
Subject Author Posted

3dNetCorr

storrisi October 20, 2014 12:55PM

Re: 3dNetCorr

ptaylor October 20, 2014 02:14PM

Re: 3dNetCorr

storrisi October 21, 2014 12:58PM

Re: 3dNetCorr

ptaylor October 21, 2014 02:20PM

Re: 3dNetCorr

storrisi October 21, 2014 03:41PM

Re: 3dNetCorr

ptaylor October 21, 2014 03:55PM

Re: 3dNetCorr

storrisi October 21, 2014 04:02PM

Re: 3dNetCorr

ptaylor October 21, 2014 04:30PM

Re: 3dNetCorr

storrisi October 21, 2014 05:38PM