AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 24, 2014 12:46PM
Hi Ajay,

I have little experience with ICA, though censoring
seems uncommon in such a case. Ignoring whether it
is a good idea, if you just want to remove censored
TRs from a time series, consider soemthing like:

set keep_trs = `1d_tool.py -infile $censor_file -show_trs_uncensored encoded`
echo "keeping TRs: $keep_trs"
3dTcat -prefix rest_censored $rest_file"[$keep_trs]"

- rick
Subject Author Posted

ICA analysis and motion scrubbing (censor timepoints) using 3dDeconvolve

AjaySK October 23, 2014 11:06AM

Re: ICA analysis and motion scrubbing (censor timepoints) using 3dDeconvolve

rick reynolds October 24, 2014 12:46PM

Re: ICA analysis and motion scrubbing (censor timepoints) using 3dDeconvolve

AjaySK October 29, 2014 02:33PM