AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 29, 2014 04:50PM
Hi Seul,

I don't know about how the threshold works in the FSL viewer, but you could threshold the volume for good before passing it to FSL with 3dcalc with the step function.

3dcalc -a CORR_DSET -b CORR_DSET'[THRESHOLD_LABEL]' -expr 'step(b-THR)*a' -prefix BRUTE_THRESHOLD

where THRESHOLD_LABEL is the label of the sub-brick with which you are thresholding in AFNI, and THR is the threshold value.

cheers
z
Subject Author Posted

InstaCorr: save correlation map

Seul October 28, 2014 11:52PM

Re: InstaCorr: save correlation map

Emperor Zhark October 29, 2014 08:49AM

Re: InstaCorr: save correlation map

Seul October 29, 2014 04:26PM

Re: InstaCorr: save correlation map

ziad October 29, 2014 04:50PM