AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
November 18, 2014 05:18AM
3dSkullStrip command is showing below error:
"3dSkullStrip: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory"

Output of ls:

bibl04@BIBL04:~/Desktop/BET/Data$ ls
subject05_t1w_p4.nii subject42_t1w_p4.nii subject48_t1w_p4.nii
subject06_t1w_p4.nii subject43_t1w_p4.nii subject49_t1w_p4.nii
subject18_t1w_p4.nii subject44_t1w_p4.nii subject50_t1w_p4.nii
subject20_t1w_p4.nii subject45_t1w_p4.nii subject51_t1w_p4.nii
subject38_t1w_p4.nii subject46_t1w_p4.nii subject52_t1w_p4.nii
subject41_t1w_p4.nii subject47_t1w_p4.ni


Output of 3dinfo:

++ 3dinfo: AFNI version=AFNI_2011_12_21_1014 (Nov 8 2014) [64-bit]

Dataset File: subject05_t1w_p4.nii
Identifier Code: NII_7q-1WBKkvHrkx2FtZJWK7Q Creation Date: Tue Nov 18 15:46:04 2014
Template Space: ORIG
Dataset Type: Anat Bucket (-abuc)
Byte Order: LSB_FIRST {assumed} [this CPU native = LSB_FIRST]
Storage Mode: NIFTI
Storage Space: 47,448,064 (47 million [mega]) bytes
Geometry String: "MATRIX(-1,0,0,127.75,0,-1,0,145.75,0,0,1,-72.25):256,256,181"
Data Axes Tilt: Plumb
Data Axes Orientation:
first (x) = Left-to-Right
second (y) = Posterior-to-Anterior
third (z) = Inferior-to-Superior [-orient LPI]
R-to-L extent: -127.250 [R] -to- 127.750 [L] -step- 1.000 mm [256 voxels]
A-to-P extent: -109.250 [A] -to- 145.750 [P] -step- 1.000 mm [256 voxels]
I-to-S extent: -72.250 -to- 107.750 [S] -step- 1.000 mm [181 voxels]
Number of values stored at each pixel = 1
-- At sub-brick #0 '?' datum type is float
Subject Author Posted

Regarding 3dSkullStrip

Gunjan November 06, 2014 05:48AM

Re: Regarding 3dSkullStrip eye rolling smiley

Peter Molfese November 06, 2014 10:19AM

Re: Regarding 3dSkullStrip eye rolling smiley

Gunjan November 07, 2014 08:20AM

Re: Regarding 3dSkullStrip eye rolling smiley

Peter Molfese November 07, 2014 10:07AM

Re: Regarding 3dSkullStrip eye rolling smiley

Gunjan November 08, 2014 06:05AM

Re: Regarding 3dSkullStrip eye rolling smiley

Peter Molfese November 08, 2014 08:50AM

Re: Regarding 3dSkullStrip eye rolling smiley

Gunjan November 10, 2014 02:28AM

Re: Regarding 3dSkullStrip eye rolling smiley

Peter Molfese November 10, 2014 10:24AM

Re: Regarding 3dSkullStrip eye rolling smiley

Gunjan November 11, 2014 01:53AM

Re: Regarding 3dSkullStrip eye rolling smiley

Peter Molfese November 11, 2014 09:38AM

Re: Regarding 3dSkullStrip eye rolling smiley

Gunjan November 18, 2014 05:18AM

Re: Regarding 3dSkullStrip eye rolling smiley

Isaac Schwabacher November 18, 2014 11:03AM

Re: Regarding 3dSkullStrip eye rolling smiley

Gunjan November 19, 2014 04:43AM

Re: Regarding 3dSkullStrip eye rolling smiley

Isaac Schwabacher November 19, 2014 10:11AM

Re: Regarding 3dSkullStrip eye rolling smiley

Gunjan November 20, 2014 03:48AM

Re: Regarding 3dSkullStrip eye rolling smiley

Isaac Schwabacher November 20, 2014 10:57AM

Re: Regarding 3dSkullStrip eye rolling smiley

Gunjan November 20, 2014 02:03AM

Re: Regarding 3dSkullStrip eye rolling smiley

ziad November 20, 2014 09:29PM

Re: Regarding 3dSkullStrip eye rolling smiley

Gunjan November 22, 2014 05:42AM

Re: Regarding 3dSkullStrip eye rolling smiley

Daniel Glen November 21, 2014 08:35AM

Re: Regarding 3dSkullStrip eye rolling smiley

Daniel Glen November 22, 2014 06:52AM