AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 18, 2014 08:51PM
Hi -

I have a condition A that can be decomposed into sub-conditions a_1 and a_2. Contrasting the sub-conditions with each other is of experimental interest, so right now the stimuli for a_1 and a_2 are specified directly to 3dDeconvolve in something like the following (simplified for illustration):
   3dDeconvolve -input pb04.${subjDay}.r*.scale+tlrc.HEAD                      
      -stim_times_AM2 1 a_1.1D "BLOCK(4, 1)"
      -stim_label 1 a_1
      -stim_times_AM2 2 a_2.1D "BLOCK(4, 1)"
      -stim_label 2 a_2
	  [...]
      -gltsym 'SYM: a_1[0] -a_2[0]'                                             
      -glt_label 1 'a1-a2'
That's all fine -- I get regressors for a_1 and a_2 and all is well. However, now I'd like to get an overall regressor that encapsulates both of these subtypes. I can't just add a new -stim_times that includes the union of a_1.1D and a_2.1D because that would be collinear with the existing regressors. I could re-run the whole analysis, replacing the two -stim_times with a single -stim_times that is the union of all a_1 and a_2 events, which would produce a 'parallel dataset' containing a single sub-brick for the superset A, but it seems like there would be a better solution than that. Is there?
Subject Author Posted

3dDeconvolve with event subtypes and supertypes

shanusmagnus November 18, 2014 08:51PM

Re: 3dDeconvolve with event subtypes and supertypes

gang November 19, 2014 09:50AM

Re: 3dDeconvolve with event subtypes and supertypes

shanusmagnus November 19, 2014 10:56AM

Re: 3dDeconvolve with event subtypes and supertypes

gang November 19, 2014 11:15AM

Re: 3dDeconvolve with event subtypes and supertypes

Isaac Schwabacher November 19, 2014 11:45AM