AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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iain
December 15, 2014 02:09PM
After some digging, it turns out subprocess.Popen (invoked around line 864 in afni_base) defaults to /bin/sh. (Is this new?) My login shell is /bin/tcsh. (Has been for years.) Accordingly, I specify modifications to PATH, including $AFNI_HOME, in ~/.tcshrc, which /bin/sh, of course, does not look at. The odd thing is that I have been running this set up for years without this error. The only thing different now is that I am on a fresh migration to a new machine running OS X 10.10.

I did a find and replace to afni_base, inserting the argument “executable='/bin/tcsh’” into the call to Popen. This solved the problem. I, however, anticipate this breaking as soon as I next update AFNI. Any thoughts on a more stable solution?

cheers
Iain
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Subject Author Posted

align_epi_anat.py TypeError: float() argument must be a string or a number

iain December 12, 2014 11:03AM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

Daniel Glen December 12, 2014 11:49AM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

Isaac Schwabacher December 12, 2014 12:10PM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

iain December 12, 2014 06:28PM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

iain December 12, 2014 06:22PM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

iain December 15, 2014 02:09PM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

Daniel Glen December 16, 2014 03:15PM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

iain December 17, 2014 02:45PM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

Daniel Glen December 17, 2014 04:55PM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

Isaac Schwabacher December 17, 2014 06:04PM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

iain December 18, 2014 11:01AM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

iain December 18, 2014 11:18AM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

iain December 18, 2014 11:39AM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

Isaac Schwabacher December 18, 2014 11:42AM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

Isaac Schwabacher December 18, 2014 12:47PM

Re: align_epi_anat.py TypeError: float() argument must be a string or a number

iain December 18, 2014 09:24PM