AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 12, 2014 02:43PM
Dear Afni Experts,

What is the minimal amount of motion that 3dvolreg can detect and output in the motion params? I have a spherical water phantom that obviously cannot move much, but I 3dvolreg-ed it anyway and when I looked at the motion params it finds rotations and translations in each that are much, much smaller than the voxel size. For example, movement of .01 degrees in the yaw, or .005 mm in z, when my voxel size is 2.5 mm isotropic. I read through the Cox and Jesmanowicz 1999 MRM paper, and the README.registration file, both of which state that movement should be in the neighborhood of 1-2 mm or degrees to be detectable. Does 3dvolreg use a resampling of the grid to find these small motion values?

thanks in advance!

michael
Subject Author Posted

movement much less than voxel size ?

michael tobia December 12, 2014 02:43PM

Re: movement much less than voxel size ?

rick reynolds December 12, 2014 04:15PM

Re: movement much less than voxel size ?

michael tobia December 12, 2014 04:56PM

Re: movement much less than voxel size ?

rick reynolds December 13, 2014 09:33PM

Re: movement much less than voxel size ?

michael tobia December 15, 2014 08:37AM

Re: movement much less than voxel size ?

rick reynolds December 15, 2014 09:52AM

Re: movement much less than voxel size ?

michael tobia December 16, 2014 05:58AM