AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 15, 2014 03:18PM
Hi there,

I'm running into this error output:

-- applying orig view as NO-DSET
** warning: removing first 2 TRs from beginning of each run
--> the stimulus timing files must reflect the removal of these TRs
** 3dAttribute exec failure for "TAXIS_NUMS Sub0043_Ses1/bold/002/Sub0043_Ses1_bld002_rest.nii.gz"
["*** Can't open dataset Sub0043_Ses1/bold/002/Sub0043_Ses1_bld002_rest.nii.gz"]
** failed to find the number of TRs from dset 'Sub0043_Ses1/bold/002/Sub0043_Ses1_bld002_rest.nii.gz'

when I run this command:

afni_proc.py -subj_id ${ss} \
-script proc.${ss} -scr_overwrite -blocks despike align \
volreg mask regress -copy_anat ./${ss}_Ses1/anat/001/${ss}_Ses1_mpr001_reorient.nii.gz \
-tcat_remove_first_trs 2 -dsets ./${ss}_Ses1/bold/002/${ss}_Ses1_bld002_rest.nii.gz \
-align_opts_aea -cost lpc+ZZ -giant_move \
-volreg_align_to third -volreg_align_e2a \
-regress_apply_mot_types demean deriv -regress_motion_per_run \
-mask_segment_anat yes -regress_run_clustsim no \
-regress_anaticor -regress_opts_3dD -GOFORIT 4 \
-regress_est_blur_epits \
-regress_est_blur_errts -execute

I've scoured the message board and other sites and can't seem to figure this one out. I'm fairly new to AFNI, so I apologize if this is a beginner's mistake!

My afni -ver is Precompiled binary linux_gcc32: Nov 21 2014 (Version AFNI_2011_12_21_1014).

Thanks for the help!

James
Subject Author Posted

3dAttribute exec failure

bursley December 15, 2014 03:18PM

Re: 3dAttribute exec failure

bursley December 16, 2014 05:06PM

Re: 3dAttribute exec failure

Isaac Schwabacher December 16, 2014 05:24PM

Re: 3dAttribute exec failure

Peter Molfese December 16, 2014 06:34PM

Re: 3dAttribute exec failure

jbursley December 23, 2014 02:33PM

Re: 3dAttribute exec failure

Peter Molfese December 23, 2014 04:23PM

Re: 3dAttribute exec failure

jbursley December 23, 2014 08:18PM

Re: 3dAttribute exec failure

ziad December 24, 2014 09:20AM

Re: 3dAttribute exec failure

jbursley December 28, 2014 03:06PM

Re: 3dAttribute exec failure

bursley January 14, 2015 10:46AM

Re: 3dAttribute exec failure

rick reynolds December 17, 2014 11:48AM