AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
January 22, 2015 10:58AM
I haven't tried the no fink version yet.

Here's the output of afni_system_check.py -check_all

-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 10.8.0
version: Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386
distribution: 10.6.8 i386
number of CPUs: 2
apparent login shell: tcsh

--------------------- AFNI and related program tests ---------------------
which afni : /Users/Alma/abin/afni
afni version : Precompiled binary macosx_10.6_Intel_64: Jan 8 2015
which python : /Library/Frameworks/Python.framework/Versions/2.7/bin/python
python version : 2.7.8
which R :
which tcsh : /bin/tcsh

instances of various programs found in PATH:
afni : 1 (/Users/Alma/abin/afni)
R : 0
python : 2
/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7
/usr/bin/python

testing ability to start various programs...
afni : success
suma : FAILURE
dyld: Library not loaded: /sw/lib/libglib-1.2.0.dylib
Referenced from: /Users/Alma/abin/suma
Reason: image not found
3dSkullStrip : FAILURE
dyld: Library not loaded: /sw/lib/libglib-1.2.0.dylib
Referenced from: /Users/Alma/abin/3dSkullStrip
Reason: image not found
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : FAILURE
/bin/sh: SurfMesh: command not found

checking for $HOME files...
.afnirc : found
.sumarc : missing
.afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
---------------------------------------------------------
** python module not found: PyQt4

-> please see the output of "uber_subject.py -help_install"


------------------------------- path vars --------------------------------
PATH = /Library/Frameworks/Python.framework/Versions/2.7/bin:/sw/bin:/sw/sbin:/sw/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin:/Users/Alma/abin:/usr/X11R6/bin:/Users/Alma/abin:/Users/Alma/abin

PYTHONPATH =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =

------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME/Data
top history: 21 May 2014 [gangc]: changes to GroupAna_cases tree
data dir : missing suma_demo
atlas : found TT_N27+tlrc under /Users/Alma/abin

------------------------------ OS specific -------------------------------

---------------------------- general comments ----------------------------
* consider running "suma -update_env" for .sumarc
Subject Author Posted

3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 21, 2015 03:24PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Daniel Glen January 21, 2015 04:25PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 21, 2015 04:44PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Daniel Glen January 21, 2015 05:06PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 21, 2015 05:09PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Brian Pittman January 21, 2015 06:03PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 22, 2015 10:25AM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

rick reynolds January 22, 2015 10:51AM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 22, 2015 10:58AM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 22, 2015 11:55AM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

Alma January 22, 2015 12:10PM

Re: 3dSkullStrip/glib issues, Mac OSX 10.6.8

rick reynolds January 22, 2015 01:03PM