AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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andrea.gold@nih.gov
January 28, 2015 02:45PM
Hi Peter,

Thanks so much!

Two points to clarify re: #1 - you said to use the "unsmoothed" data (m0wrp1*.nii), but I'm wondering if this should be the smoothed data (sm0wrp1*.nii) as the input to 3dFWHMx?

Also, we already creaed a custom (DARTEL) GM template in SPM8 for our sample (given it is a pediatric sample) -- do you know if this is appropraite to use as the mask input to 3dFWHMx and 3dClustSim or would you suggest going the route you suggested with creating one with AFNI tools?

Thanks again,
Andrea
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Subject Author Posted

Input files to 3dFWHMx and 3dClustSim command for VBM data (from SPM)

andrea.gold@nih.gov January 25, 2015 11:38AM

Re: Input files to 3dFWHMx and 3dClustSim command for VBM data (from SPM)

Peter Molfese January 25, 2015 12:43PM

Re: Input files to 3dFWHMx and 3dClustSim command for VBM data (from SPM)

andrea.gold@nih.gov January 28, 2015 02:45PM

Re: Input files to 3dFWHMx and 3dClustSim command for VBM data (from SPM)

Peter Molfese January 28, 2015 03:32PM