AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
February 26, 2015 04:26PM
Hi,
I am trying to run ANOVA with covariate, so using 3dMVM.
I have 3 groups and 2 conditions and Age and Gender are used as a covariate.

I want to get the effect of covariates alone and combined . Here is a sample script, I wrote which is giving me this error on execution:
Incorrect level coding in variable Group :F
Incorrect level coding in variable Group :M

here is my script:
#!/bin/tcsh

3dMVM -prefix 3dMVM.WB.CON-PDL-Atypical.same -jobs 4 \
-bsVars 'Group+Age+Gender' \
-wsVars Task \
-qVars Age,Gender \
-num_glt 7 \
-gltLabel 1 CON_Mean -gltCode 1 'Group : 1*CON' \
-gltLabel 2 PDL_Mean -gltCode 2 'Group : 1*PDL' \
-gltLabel 3 Atypical_Mean -gltCode 3 'Group : 1*Atypical' \
-gltLabel 4 CON-PDL -gltCode 4 'Group : 1*CON -1*PDL Gender : 1*F -1*M' \
-gltLabel 5 CON-Atypical -gltCode 5 'Group : 1*CON -1*Atypical Gender : 1*F -1*M' \
-gltLabel 6 PDL-Atypical -gltCode 6 'Group : 1*PDL -1*Atypical Gender : 1*F -1*M' \
-gltLabel 7 Grp_by_Task_interaction -gltCode 7 'Group : 1*CON -1*PDL Task : 1*same_vis -1*same_nv' \
-dataTable \
Subj Group Task Age Gender InputFile \
CON_001 CON same_vis 77 F stats_same.CON_001_2-1+tlrc'[same_vis#0_Coef]' \
CON_001 CON same_nv 77 F stats_same.CON_001_2-1+tlrc'[same_nv#0_Coef]' \
CON_002 CON same_vis 65 M stats_same.CON_002_2-1+tlrc'[same_vis#0_Coef]' \
CON_002 CON same_nv 65 M stats_same.CON_002_2-1+tlrc'[same_nv#0_Coef]' \
....
Subject Author Posted

3dMVM error: Incorrect level coding in variable Group

pshuk February 26, 2015 04:26PM

Re: 3dMVM error: Incorrect level coding in variable Group

gang February 27, 2015 09:48AM

Re: 3dMVM error: Incorrect level coding in variable Group

pshuk February 27, 2015 10:13AM

Re: 3dMVM error: Incorrect level coding in variable Group

gang February 27, 2015 02:12PM

Re: 3dMVM error: Incorrect level coding in variable Group

pshuk February 27, 2015 04:44PM

Re: 3dMVM error: Incorrect level coding in variable Group

gang February 27, 2015 05:46PM

Re: 3dMVM error: Incorrect level coding in variable Group

kaitlyn2905 April 06, 2015 08:39PM

Re: 3dMVM error: Incorrect level coding in variable Group

Peter Molfese April 06, 2015 09:11PM

Re: 3dMVM error: Incorrect level coding in variable Group

kaitlyn2905 April 09, 2015 06:34PM

Re: 3dMVM error: Incorrect level coding in variable Group

gang April 10, 2015 12:00PM

Re: 3dMVM error: Incorrect level coding in variable Group

kaitlyn2905 April 10, 2015 05:43PM

Re: 3dMVM error: Incorrect level coding in variable Group

gang April 11, 2015 03:04PM

Re: 3dMVM error: Incorrect level coding in variable Group

kaitlyn2905 April 13, 2015 06:52PM