Danny,
If you want to correlate the PPI effect of conditionA - conditionB, you can do either of the following:
1) Use 3dcalc to obtain the PPI effect of conditionA - conditionB at the whole brain level for each subject and then do the extraction at the region level;
2) Extract the PPI effect at the region for conditionA and conditionB for each subject and then do the subtraction.
Either way should be fine (they are equivalent).
Gang
Edited 1 time(s). Last edit at 05/21/2015 05:54PM by Gang.