AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 18, 2015 02:01PM
The dry_run option is useful for creating your own script. It doesn't actually read the dataset, so the 1.234567 is just a filler for an actual value for the spacing. The e2a matrix is a temporary matrix that corresponds to just the alignment between anat and epi and does not include obliquity, motion correction or an alignment transformation to a standard template. It is saved as "e2a" because 3dAllineate saves the matrix in terms of a base to source transformation instead of the direction you might expect, source to base - anat to epi.
Subject Author Posted

Deoblique

udaykurkure March 12, 2015 11:39AM

Re: Deoblique

Daniel Glen March 12, 2015 11:55AM

Re: Deoblique

udaykurkure March 12, 2015 05:12PM

Re: Deoblique

Daniel Glen March 13, 2015 02:23PM

Re: Deoblique

udaykurkure March 18, 2015 01:07PM

Re: Deoblique

Daniel Glen March 18, 2015 02:01PM

Re: Deoblique

udaykurkure March 24, 2015 05:46PM

Re: Deoblique

Daniel Glen March 25, 2015 12:01PM

Re: Deoblique

udaykurkure March 25, 2015 02:16PM

Re: Deoblique

Daniel Glen March 25, 2015 04:12PM

Re: Deoblique

udaykurkure March 25, 2015 06:07PM

Re: Deoblique

Daniel Glen March 25, 2015 06:44PM

Re: Deoblique

udaykurkure March 25, 2015 07:03PM