AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 25, 2015 06:44PM
No, you do not need to align a mask to a cardinal epi (I'm not sure what you mean by aligning a mask here).

If you would like to combine alignment with obliquity handling, I would recommend using align_epi_anat.py (for anat2epi) and then apply the same transformation with 3dAllineate -1D_matrix_apply. The transformation will include both the obliquity transformation together with the alignment.

If you assume alignment of epi with anat data to start, just use the 3dWarp command I recommended.



Edited 1 time(s). Last edit at 03/25/2015 10:47PM by Daniel Glen.
Subject Author Posted

Deoblique

udaykurkure March 12, 2015 11:39AM

Re: Deoblique

Daniel Glen March 12, 2015 11:55AM

Re: Deoblique

udaykurkure March 12, 2015 05:12PM

Re: Deoblique

Daniel Glen March 13, 2015 02:23PM

Re: Deoblique

udaykurkure March 18, 2015 01:07PM

Re: Deoblique

Daniel Glen March 18, 2015 02:01PM

Re: Deoblique

udaykurkure March 24, 2015 05:46PM

Re: Deoblique

Daniel Glen March 25, 2015 12:01PM

Re: Deoblique

udaykurkure March 25, 2015 02:16PM

Re: Deoblique

Daniel Glen March 25, 2015 04:12PM

Re: Deoblique

udaykurkure March 25, 2015 06:07PM

Re: Deoblique

Daniel Glen March 25, 2015 06:44PM

Re: Deoblique

udaykurkure March 25, 2015 07:03PM