AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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francescastrappini
March 25, 2015 03:19PM
Hi,

I'm trying to import the ROIs created in the surface with freesurfer using retinotopic data.
I ran this command, and I would like to ask if is it the right procedure. They originally regions were aligned with freesurfer anatomy, I don't know if this registration went lost when I imported the surfaces to SUMA.

FSread_annot -input lh.V3ALG.annot -roi_1D lh.V3ALG.1D.roi -hemi lh -col_1D lh.V3ALG.1D.col -FScmap /usr/local/freesurfer/FreeSurferColorLUT.txt

++ Notice FSread_annot (/tmp/buildd/afni-0.20141224~dfsg.1/SUMA/SUMA_FSread_annot.c:303 @23:59:02):
Assuming FS annot version of -1
oo Warning SUMA_readFSannot (/tmp/buildd/afni-0.20141224~dfsg.1/SUMA/SUMA_Surface_IO.c:2475):
Node Color (label) not found in cmap.
Marking with annotation value.
Further occurences will not be reported.

Thanks,

Best
Francesca
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Subject Author Posted

converting labels from freesurfer

francescastrappini March 25, 2015 03:19PM

Re: converting labels from freesurfer

ziad March 25, 2015 06:16PM

Re: converting labels from freesurfer

francescastrappini April 28, 2015 07:50AM