AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 31, 2015 12:52PM
When I run my model below, my contrast 4 output map (HiFat + LowFat - NonFood) looks exactly like my contrast 3 output map (HiFat - LowFat). Does 3dLME handle these types of contrasts similar to contrast 4, 5 or 6?

3dLME -prefix LME_GlucCntlvsGlucSal_GrpxSessxTask_n34_covaryWantingHunger -jobs 2 \
-mask MNI_T1_3mm_mask.nii.gz \
-model 'Wanting*Hunger+Session*Task*Group' \
-qVars 'Wanting,Hunger' \
-qVarCenters '3.89,4.45' \
-SS_type 1 \
-ranEff '~1' \
-num_glt 6
-gltLabel 1 'HF-NF' -gltCode 1 'Task : 1*HiFat -1*NonFood ' \
-gltLabel 2 'LF-NF' -gltCode 2 'Task : 1*LowFat -1*NonFood ' \
-gltLabel 3 'HF-LF' -gltCode 3 'Task : 1*HiFat -1*LowFat ' \
-gltLabel 4 'AllFood-NF' -gltCode 4 'Task : 0.5*HiFat 0.5*LowFat -1*NonFood' \
-gltLabel 5 'Eugly_AllFood-NF' -gltCode 5 'Task : 0.5*HiFat 0.5*LowFat -1*NonFood Group : 1*Eugly' \
-gltLabel 6 'Sal_AllFood-NF' -gltCode 6 'Task : 0.5*HiFat +0.5*LowFat -1*NonFood Group : 1*Saline' \


Thanks,

Cheryl
Subject Author Posted

3dLME contrasts

cherlac March 31, 2015 12:52PM

Re: 3dLME contrasts

Colm Connolly March 31, 2015 04:30PM

Re: 3dLME contrasts

gang March 31, 2015 05:35PM

Re: 3dLME contrasts

cherlac April 02, 2015 02:24PM

Re: 3dLME contrasts

gang April 02, 2015 02:57PM

Re: 3dLME contrasts

cherlac April 02, 2015 03:19PM

Re: 3dLME contrasts

gang April 02, 2015 04:08PM

Re: 3dLME contrasts

cherlac April 02, 2015 04:42PM

Re: 3dLME contrasts

gang April 02, 2015 06:19PM

Re: 3dLME contrasts

cherlac April 07, 2015 10:50AM