AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 06, 2015 09:21AM
Claudio,

It's not clear from your first question whether you are correlating betas across subjects between the two tasks, or are correlating results in 1 subject across different events in the 2 tasks.

In either case, you have to create 2 datasets (via 3dbucket or 3dTcat), that contain the beta "time series" (or "subject series") -- one dataset for each task. Then 3dTcorrelate will calculate the correlation coefficient -- or similar measure -- of association between the 2 data series, voxel-by-voxel. Of course, the 2 datasets have to have the same number of volumes (=sub-bricks) for this to work.

3dttest++ isn't really appropriate, it seems to me -- the voxel-wise covariate is not the right thing to use, since you have a large number of "time" or "subject" points in each dataset.

If you want to look at the correlation maps between a fixed seed voxel in one task dataset vs. all locations in the second task dataset, you can do this interactively with InstaCorr, using the ExtraSet option. That is, you would pick a seed location (say the insula) in the task#1 dataset, and see how correlated all the voxels in the task#2 dataset with that one time series from the first dataset. You could use this method to interactively and dynamically explore the spatial inter-dependence of the 2 task activations. If you are especially adventurous, you open 2 AFNI controllers and do the task#1->task#2 InstaCorr in one window and the task#2->task#1 at the same time in a second window!
Subject Author Posted

correlation voxel by voxel among datasets

claudio_gentili April 04, 2015 12:21PM

Re: correlation voxel by voxel among datasets

gang April 04, 2015 03:41PM

Re: correlation voxel by voxel among datasets

maitra April 04, 2015 04:04PM

Re: correlation voxel by voxel among datasets

claudio_gentili April 04, 2015 04:52PM

Re: correlation voxel by voxel among datasets

gang April 04, 2015 08:56PM

Re: correlation voxel by voxel among datasets

maitra April 04, 2015 09:04PM

Re: correlation voxel by voxel among datasets

maitra April 04, 2015 09:00PM

Re: correlation voxel by voxel among datasets

Emperor Zhark April 06, 2015 09:21AM

Re: correlation voxel by voxel among datasets

Daniel Glen April 06, 2015 12:02PM

Re: correlation voxel by voxel among datasets

claudio_gentili April 21, 2015 11:08AM

Re: correlation voxel by voxel among datasets

Şerban Condrea April 22, 2015 04:57AM