AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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sjordaz
April 14, 2015 12:08AM
Hi there,

I'm trying to run 3dNetCorr so that I can get a whole-brain map showing z-transformed correlations with a given ROI. The ROI file I have provided in "-in_rois" has two different ROIs in it. The script I'm running to do this is as follows. And, of course, I'm doing this at the single-subject level.

3dNetCorr \
-inset rest_raw_rdptkmas173ndb.nii.gz
-in_rois ROIdir/PCCand2.nii.gz
-fish_z
-ts_wb_Z
-nifti
-prefix 001-T1_PCCand2

However, I'm getting the following error:
** ERROR: Bad option '-ts_wb_Z'

Removing this option doesn't fix the problem (it gives me: ** ERROR: Bad option '-nifti'). Can you please advise about how to troubleshoot?

Many thanks,
Sarah
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Subject Author Posted

3dNetCorr error

sjordaz April 14, 2015 12:08AM

Re: 3dNetCorr error

ptaylor April 14, 2015 02:14AM

Re: 3dNetCorr error

sjordaz April 15, 2015 12:39PM

Re: 3dNetCorr error

ptaylor April 15, 2015 02:58PM

Re: 3dNetCorr error

sjordaz April 20, 2015 06:00PM

Re: 3dNetCorr error

ptaylor April 20, 2015 06:18PM