Thank you!
Unfortunately it looks like my afni version is so old that I don't have @update.afni.binaries. Could you please tell me which is the latest version I should download from the website? There are several versions for Linux and it's not clear to me which is the good one. I have Ubuntu 14.04 64.
Sorry, I don't understand exactly what you mean for "prior output". I'm trying to run the preprocessing on raw data.
I've just registered the functional run to the anatomy (with which I created the surface in freesurfer) before running the preprocessing thinking it could help.
Thanks again
Best
Francesca