AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 28, 2015 03:26PM
Hi Daniel,

Sorry I think I am being incredibly obtuse.

So we have my MNI template, my FA image which is in diffusion space, and my ROI which is already in MNI space (I don't have transform matrices from this, this was made from an afni atlas already in MNI space).

I guess I am getting confused on where to put what. Does my FA image serve as the input to auto_warp.py. So this will get my FA image in template space. Then I am unsure what goes with what for 3dNwarp apply.

My apologies for all of the back and forth.

Emily
Subject Author Posted

Alignment Issues

Emily April 28, 2015 01:19PM

Re: Alignment Issues

Daniel Glen April 28, 2015 01:38PM

Re: Alignment Issues

Emily April 28, 2015 02:53PM

Re: Alignment Issues

Daniel Glen April 28, 2015 03:03PM

Re: Alignment Issues

Emily April 28, 2015 03:26PM

Re: Alignment Issues

Daniel Glen April 28, 2015 04:55PM

Re: Alignment Issues

Emily April 28, 2015 08:42PM

Re: Alignment Issues

Daniel Glen April 29, 2015 12:26PM

Re: Alignment Issues Attachments

ruyuanzhang November 16, 2018 09:32PM

Re: Alignment Issues

Daniel Glen November 19, 2018 08:03PM

Re: Alignment Issues

ruyuanzhang November 20, 2018 02:03PM

Re: Alignment Issues

Daniel Glen November 20, 2018 04:06PM