AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 04, 2015 08:42AM
Hi Afni experts,

I'm having some troubles trying to extract the time series from some surface-based regions I created with freesurfer. I did the following steps:

1. I drew some regions on the individual surfaces with Freesurfer (labels)
2. I created an annot file with mris_label2annot
3. I used FSread_annot to convert the annot file to the .roi file
4. I turned the roi into a dataset with ROI2dataset

Now I'm trtying to use ConvertDset to assign a value to each vertex of the region/mask but I got the following error message.

ConvertDset -i lh.V1dorsalDM.1D.dset -o_1D -pad_to_node ld120 -prefix lh.V1dorsalDM.FULL

d120 -prefix lh.V1dorsalDM.FULL
++ Notice ConvertDset (SUMA_ConvertDset.c:881 @13:56:22):
Padding output dset until node 144001
Error SUMA_PaddedCopyofDset (suma_datasets.c:3656):
No node index element!
-- Error ConvertDset (SUMA_ConvertDset.c:979):
NULL dset
-- Error SUMA_WriteDset_eng (SUMA_DataSets.c:77):
NULL dset
-- Error ConvertDset (SUMA_ConvertDset.c:1017):
Failed to write dataset.

Thanks in advance,

Best
Francesca
Subject Author Posted

ConvertDset error

francescastrappini May 04, 2015 08:42AM

Re: ConvertDset error

ziad May 06, 2015 06:12PM

Re: ConvertDset error

francescastrappini May 06, 2015 07:34PM

Re: ConvertDset error

ziad May 07, 2015 02:03PM

Re: ConvertDset error

francescastrappini May 07, 2015 04:13PM

Re: ConvertDset error

ziad May 08, 2015 09:35AM

Re: ConvertDset error

francescastrappini May 11, 2015 07:51AM

Re: ConvertDset error

ziad May 15, 2015 10:09AM

Re: ConvertDset error

francescastrappini May 12, 2015 10:30AM

Re: ConvertDset error

ziad May 15, 2015 10:10AM

Re: ConvertDset error

francescastrappini May 19, 2015 09:09AM