AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 30, 2015 09:23PM
Thank you for nice reply!

I have one more question.

I drew a minip tractography.

I made a netrois file, which is made with two roi files.

However, when I view the output grid file, it contains the following:

leetaeyui-Mac-Pro:1001 leetaey$ cat tract.r.tha-ofc_000.grid
# 2 # Number of network ROIs
# 17 # Number of grid matrices
# WITH_ROI_LABELS
001 002
1 2
# NT
81025 14
14 43144
# fNT
2.252820e-02 3.892562e-06
3.892562e-06 1.199576e-02
# PV
6.469600e+04 4.720000e+02
4.720000e+02 5.662400e+04
# fNV
4.894123e-02 3.570586e-04
3.570586e-04 4.283492e-02
# NV
8.087000e+03 5.900000e+01
5.900000e+01 7.078000e+03
# FA
4.130704e-01 4.096045e-01
4.096045e-01 3.369234e-01
# sFA
2.173442e-01 1.437584e-01
1.437584e-01 1.910252e-01
# MD
1.264891e+00 8.826535e-01
8.826535e-01 1.066070e+00
# sMD
9.137838e+00 5.143825e-01
5.143825e-01 2.927470e+00
# L1
2.005381e+00 1.234964e+00
1.234964e+00 1.608433e+00
# sL1
2.713691e+01 5.488138e-01
5.488138e-01 8.388085e+00
# RD
8.946502e-01 7.064979e-01
7.064979e-01 7.948889e-01
# sRD
8.299646e-01 5.043321e-01
5.043321e-01 5.369039e-01
# L2
9.988644e-01 8.240543e-01
8.240543e-01 9.162866e-01
# sL2
8.482569e-01 5.384176e-01
5.384176e-01 7.662724e-01
# L3
7.103091e-01 5.889417e-01
5.889417e-01 6.633191e-01
# sL3
6.760154e-01 4.753560e-01
4.753560e-01 3.906177e-01


I know the results contains mean and standard deviation.

However, it has two means and two standard deviations.

How can I deal with this?

And, is it correct values in FA? they seem too high..
Subject Author Posted

How to make multibrick ROI for 3dTrackID?

leetaey May 12, 2015 12:48AM

Re: How to make multibrick ROI for 3dTrackID?

ptaylor May 12, 2015 04:27AM

Re: How to make multibrick ROI for 3dTrackID?

leetaey May 12, 2015 08:35AM

Re: How to make multibrick ROI for 3dTrackID?

ptaylor May 12, 2015 09:26AM

Re: How to make multibrick ROI for 3dTrackID?

leetaey May 30, 2015 09:23PM

Re: How to make multibrick ROI for 3dTrackID?

ptaylor June 01, 2015 04:49PM

Re: How to make multibrick ROI for 3dTrackID?

leetaey June 01, 2015 06:34PM

Re: How to make multibrick ROI for 3dTrackID?

ptaylor June 02, 2015 06:42AM

Re: How to make multibrick ROI for 3dTrackID?

leetaey June 03, 2015 10:14AM

Re: How to make multibrick ROI for 3dTrackID?

ptaylor June 03, 2015 01:44PM

Re: How to make multibrick ROI for 3dTrackID?

leetaey June 10, 2015 11:20PM

Re: How to make multibrick ROI for 3dTrackID?

ptaylor June 10, 2015 11:55PM