AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Peter Molfese
May 18, 2015 10:58AM
If you were to use align_epi_anat.py to take care of both the deoblique and alignment to an anatomical (and the motion correction), you could use this script to take care of the rotations.

Alternatively, you could use TORTOISE to handle a considerable amount of preprocessing (eddy current "correction", motion correction, alignment to anatomic, etc), all while taking care of any b-vector rotations.

There are other possibilities as well, but I would start with one of these two options.
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Subject Author Posted

rotate vectors

leetaey May 18, 2015 12:14AM

Re: rotate vectors

Peter Molfese May 18, 2015 10:58AM

Re: rotate vectors

leetaey May 21, 2015 12:58AM