AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 21, 2015 11:46AM
I do run 3dwarp on the structural image and the functional runs in my script. Should I modify this in the script for this person?

Here is the command for the structural image:
3dWarp -deoblique -prefix $output_dir/$subj.mprage $subj.mprage.nii

and for the functional runs:

# tshift
foreach run ( $runs )
3dTshift -tzero 0 -quintic -prefix rm.r$run.tshift pb00.$subj.r$run.tcat+orig
3dWarp -deoblique -prefix pb01.$subj.r$run.tshift rm.r$run.tshift+orig
end
Subject Author Posted

3dvolreg: dimensions do not match

donnajb May 19, 2015 06:59PM

Re: 3dvolreg: dimensions do not match

rick reynolds May 20, 2015 03:48PM

Re: 3dvolreg: dimensions do not match

donnajb May 21, 2015 11:46AM